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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATGgtgagtatttagaatttagtgtggtgtaaattgtttacaatagtgaaactgcattatttctctgattatttctgttttgaacaattactctgtcttgatt...

Basic information

species Glycine max
transcript GLYMA10G30880.3
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254320848|gb|GR827297.1|GR827297
EST:     AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATG                         GTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
genomic: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATGgtgagtattt ... ctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
EST: gi|14990470|gb|BI316143.1|BI316143
EST:     AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATG                         GTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
genomic: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATGgtgagtattt ... ctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
EST: gi|207729253|gb|GD709109.1|GD709109
EST:     AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATG                         GTATTTATTGACATTGAAGAGGGTACAAAGACTAGGG
genomic: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATGgtgagtattt ... ctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGG
EST: gi|7590892|gb|AW706635.1|AW706635
EST:     GGAGACCAATATG                         GTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
genomic: GGAGACCAATATGgtgagtattt ... ctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
EST: gi|17401408|gb|BM178190.1|BM178190
EST:     AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATG                         GTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
genomic: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATGgtgagtattt ... ctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
EST: gi|254336691|gb|GR842870.1|GR842870
EST:     AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATG                         GTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
genomic: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATGgtgagtattt ... ctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
EST: gi|22523739|gb|BU082550.1|BU082550
EST:     AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATG                         GTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
genomic: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATGgtgagtattt ... ctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
EST: gi|13482379|gb|BG511722.1|BG511722
EST:     AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATG                         GTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
genomic: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATGgtgagtattt ... ctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
EST: gi|254336692|gb|GR842871.1|GR842871
EST:     AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATG                         GTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
genomic: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATGgtgagtattt ... ctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
EST: gi|14258404|gb|BG881312.1|BG881312
EST:     AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATG                         GTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
genomic: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATGgtgagtattt ... ctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
EST: gi|8286113|gb|BE023672.1|BE023672
EST:     TTCTGTGGAGACCAATATG                         GTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
genomic: TTCTGTGGAGACCAATATGgtgagtattt ... ctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATGgtgagtatttagaatttagtgtggtgtaaattgtttacaatagtgaaactgcattatttctctgattatttctgttttgaacaattactctgtcttgatt

- - - -  AAGAAG
- - - - - AGAAGT
- - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - -  TGGAGA