Sequence
atgc intronic sequence ATGC exonic sequenceTGAGAAAGTGGAGCAATTTTGCCTCACTAGTCCAAATGACAATGATTCATGGGACATGCATGAGGAAATGCTGAAGAACTCTGAAGATTTCTACAAAGCGgtatgatacagccactcattaaaattttcatttccatttttaaaaatgagaccttgcctcctgtaaaaatatcttaatctgcattgaaatttctaatatc...
Basic information
species | Glycine max |
transcript | GLYMA10G29600.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G29600.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g10190.1 (Oryza sativa), 5'ss of exon 7
TGAGAAAGTGGAGCAATTTTGCCTCACTAGTCCAAATGACAATGATTCATGGGACATGCATGAGGAAATGCTGAAGAACTCTGAAGATTTCTACAAAGCGgtatgatacagccactcattaaaattttcatttccatttttaaaaatgagaccttgcctcctgtaaaaatatcttaatctgcattgaaatttctaatatc
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TGAAAAGATCGAACAATTCTGTGTCACAAGTCCAAATGACAATGAATCTTGGGAGATGCATGAAGAAATGATTAAAAATTCAGAAGATTTCTACAAGGAGgtagagatcagaagcttcgtaca-tcttaagcaccttgttacatcctgaactgtcttttgatgtctaataattt----cttcattgtccattatacag--
upper sequence: GLYMA10G29600.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g37837.1 (Oryza sativa), 5'ss of exon 7
TGAGAAAGTGGAGCAATTTTGCCTCACTAGTCCAAATGACAATGATTCATGGGACATGCATGAGGAAATGCTGAAGAACTCTGAAGATTTCTACAAAGCGgtatgatacagccactcattaaaattttcatttccatttttaaaaatgagaccttgcctcctgtaaaaatatcttaatctgcattgaaatttctaatatc---
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CGAAAAGATTGAGCAATTCTGTGTTACAAGTCCAAATGACAATGAATCCTGGGAGATGCATGAAGAAATGATAAAAAATTCAGAAGATTTCTACAAGGAGgta-gacatcggaagcttcacacatcttaagcacc-ttgttacatgcggaac--tgtcttttg-----atgtct-aatcatttcttcattgtctattatacag
upper sequence: GLYMA10G29600.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G172101_T01 (Zea mays), 5'ss of exon 7
TGAGAAAGTGGAGCAATTTTGCCTCACTAGTCCAAATGACAATGATTCATGGGACATGCATGAGGAAATGCTGAAGAACTCTGAAGATTTCTACAAAGCGgtatgatacagccactcattaaaattttcatttccatttttaaaaatgagaccttgcctcctgtaaaaatatcttaatctgcattgaaatttctaatatc--
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TGAAAAAATCGAACAATTCTGCATTACAAGCCCAAATGACAACGATTCTTGGGAGATGCATGAAGAGATGCTAAAAAACTCAGAAGATTACTATAAGGAGgta--ata---------atcagtat----gttgtgatctttataacctagtttgtcctccctg---agttgtctaaatttttatttaatgtccatcttgcag
upper sequence: GLYMA10G29600.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0128g00370.t01 (Vitis vinifera), 5'ss of exon 7
TGAGAAAGTGGAGCAATTTTGCCTCACTAGTCCAAATGACAATGATTCATGGGACATGCATGAGGAAATGCTGAAGAACTCTGAAGATTTCTACAAAGCGgtatgatacagccactcattaaaattttcatttccatttttaaaaatgagaccttgcctcctgtaaaaatatcttaatctgcattgaaatttctaatatc---------
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TGAGAAAGTGGAGCAGTTCTGCATTACCAGCCCAAATGGAAATGACTCTTGGGACATGCATGAGGAAATGATTAAAAACTCAGAGGACTTTTACAAGATGgtacaag--aattcttcatttccatcagaaagaggacttttag---tttgcctttttttcttat----gttgctttatctaacaaaaaagttttaacaaaagaaaagacMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27426738|gb|CA938258.1|CA938258EST: GGGACATGCATGAGGAAATGCTGAAGAACTCTGAAGATTTCTACAAAGCG TTAAATCTTCCCTATCAAGTTGTTTCCATTGTATCTGGTGCATTGAATGAT
genomic: GGGACATGCATGAGGAAATGCTGAAGAACTCTGAAGATTTCTACAAAGCGgtatgataca ... tttactgcagTTAAATCTTCCCTATCAAGTTGTTTCCATTGTATCTGGTGCATTGAATGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAGAAAGTGGAGCAATTTTGCCTCACTAGTCCAAATGACAATGATTCATGGGACATGCATGAGGAAATGCTGAAGAACTCTGAAGATTTCTACAAAGCGgtatgatacagccactcattaaaattttcatttccatttttaaaaatgagaccttgcctcctgtaaaaatatcttaatctgcattgaaatttctaatatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA