Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCCTTGCTGTGTTGAAATTGGGGTTGGTCCAAAAGAAAGTTCTGATATTCACAAATACCATAGACATGAGTTTCAGGTTGAAACTTTTCTTGGAAAAGgtatgtttgatatataactattcatgaacattcacttgatagattttcagctttaggtatgtgttagatatatagctttttatgtatattacatgttagg...

Basic information

species Glycine max
transcript GLYMA10G29360.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G29360.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G34910.1 (Arabidopsis thaliana), 5'ss of exon 7
CATCCTTGCTGTGTTGAAATTGGGGTTGGTCCAAAAGAAAGTTCTGATATTCACAAATACCATAGACATGAGTTTCAGGTTGAAACTTTTCTTGGAAAAGgtatgtttgatatataactattcatgaacattcacttgatagattttcagctttaggtatg-tgttagatatatagctttttatgtatattacatgttagg
||| |||||| | |||||  | | | | || || |||||| ||||||| ||||  ||||| || |||||| | |||||||||||| | |||||||||||||||  ||   |    | |||| |  | |     | |  | | | | | | || ||   ||  | ||  ||   |   || || ||| | || ||       
CATTCTTGCTCTCTTGAAGCTAGAGGTTGTTCAGAAGAAAATTCTGATTTTCATCAATACAATTGACATGGGATTCAGGTTGAAATTATTCTTGGAAAAGgtaactt--gtgggcacctatacgagcattccgattctaaaaactgt-acctgtaataataatattgaattagtcttttgttttgtttcttccag------