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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaaatttttattgtaaatttgtaatatttgaaatacgacatattccattatgtttggtaatgaatttgctttctaactttgcatgctacatatttgcag

Basic information

species Glycine max
transcript GLYMA10G28890.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28890.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os07g14270.3 (Oryza sativa), 5'ss of exon 7
CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaaatttttattgtaaatttgtaatatttgaaatacg-acatattccattatgtttggtaatgaatttgctttctaactttgcatgctacatatttgcag
||||| || |||||||||||||||||||||||||||||  | || |||||| | ||||||||||||||||| |||||||||  | ||||  ||| | || | | |  | |    |    | |||||| ||   |||||| | |  | | ||  | | ||  || ||  |      |                  
CCTGAGGACTGGGATGATGAGGAAGATGGTGAGTGGACTGCACCAACCATTCCTAACCCTGAGTACAAGGGACCATGGAAGCAAAAGgt--gtgaatatctgtttactgatgcagatgcacttgaaacacttgcatatttc-tggtttctgaca-taaacatgtttctttttccag------------------

upper sequence: GLYMA10G28890.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g61670.1 (Oryza sativa), 5'ss of exon 7
CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaaatttttattgtaaatttgtaatatttgaaatacgacatattccattatgtttggtaatgaatttgctttctaactttgcatgctacatatttgcag
||||| || |||||||||||||||||||| || |||||| | || |||||| | ||||||||||||||||| ||||||||   | |||| || |      |  || ||  ||||    ||   || |  | |  |    ||| | | ||  | |  ||||     |  || ||||  || |            
CCTGAGGACTGGGATGATGAGGAAGATGGAGAATGGACAGCTCCAACCATTCCAAACCCTGAGTACAAGGGACCATGGAACCAAAAGgtatgagtgtgactgaatagttcatttactcta---gacaagctaggttcagcatcacgattactcactaattg--catgaaattttgtgtgtttag---------

upper sequence: GLYMA10G28890.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G358059_T01 (Zea mays), 5'ss of exon 7
CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaaatttttattgtaaatttgtaatatttgaaatacgacatattccattatgtttggtaatgaatttgctttctaactttgcatgctacatatttgcag
||||| || ||||| ||||||||||||||||| |||||  ||||||||||| ||||||| || |||||||| ||||||||   | ||||   ||| | ||  | ||   ||  | ||| | |   |  |   |||||||    || | ||  |       || | | | ||||  ||                
CCTGAGGACTGGGACGATGAGGAAGATGGTGAATGGACTGCCCCTACCATTCCCAACCCAGAATACAAGGGACCATGGAAACAAAAGgt--atggcagttcctttt---aacctataa-actgacagcaattcatattctg--atatctgacagca----tgttgtttcacttgccag---------------

upper sequence: GLYMA10G28890.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G074687_T01 (Zea mays), 5'ss of exon 7
CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaaatttttattgtaaatttgtaatatttgaaatacgacatattccattatgtttggtaatgaattt-gctttctaactttgcatgctacatatttgcag
||||| || |||||||| |||||||||||||| |||||  ||||||||||| ||||||| || ||||| || ||||||||   | ||||   ||| | ||  |  || || | | ||  |  ||| || | |   ||    | || | ||  |     |||  ||| | |                        
CCTGAGGACTGGGATGACGAGGAAGATGGTGAATGGACTGCCCCTACCATTCCCAACCCAGAATACAAAGGACCATGGAAACAAAAGgt--atggcagttcct--tg-aactgtatacaaactgacat-caattcatattctgatatctgacagcatgtttcacttgccag-----------------------

upper sequence: GLYMA10G28890.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G56340.1 (Arabidopsis thaliana), 5'ss of exon 5
CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaaatttttattgtaaatttgtaatatttgaaatacgacatattccattatgtttggtaatgaatttgctttctaactttgcatgctacatatttgcag
||||| || ||||||||||| |||||||||||||||||  ||||||||||| ||||||| |||||||| ||   ||||||| |  |||||||| |   ||  | ||| |       | ||||| | ||  | ||| ||   ||   |    | | |   ||| | | |   | || |                
CCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAGgtttgttggttttgctcttgaa----cagagtatttaagatg-gtcattttatcttcattcctctcacgg--ttgttgtattgttctgtag---------------

upper sequence: GLYMA10G28890.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G09210.1 (Arabidopsis thaliana), 5'ss of exon 6
CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaaatttttattgtaaatttgtaatatttgaaatacgacatattccattatgttt-ggtaatgaatttgctttctaactttgcatgctacatatttgcag
||||| || ||||||||||| |||||||||||||||||  |||| || ||  ||||||||||||||| |||   ||||||| |  ||||||||   ||||| ||||  |||       ||| |      | || | || | |  | |   ||   | || |   ||| ||                        
CCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCAACAATCCCCAACCCTGAGTACATGGGTGAATGGAAGCCTAAGgtttgtc--aatttctattccaaaaagtatctatatcctggtcaacgtttttcttcctctcaaggctgtcaaatatttttgtag-----------------------

upper sequence: GLYMA10G28890.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0060g01290.t01 (Vitis vinifera), 5'ss of exon 7
CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa-atttttattgtaaatttgtaatatttgaaatacgacatattccattatgtttggtaatgaatttgctttctaactttgcatgctacatatttgcag
|||||||||||||||||||||||||||||||| |||||| | || |||||||||||||| ||||||||||| ||||||||| || |||||||||| |   ||||| | ||| || | || |||| |  |      |  |     | |  | || || | |   || | |  ||| |||                
CCTGAAGATTGGGATGATGAGGAAGATGGTGAATGGACAGCTCCAACCATTGCCAACCCCGAGTACAAGGGACCATGGAAGCCAAAGgtttgtggcatggttttagtttaagtt-gaaacatttaattt------tgctggtaaaagagttgtcataattcctctctatctcttggcag---------------

upper sequence: GLYMA10G28890.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0005g01390.t01 (Vitis vinifera), 5'ss of exon 7
CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaaatttttattgtaaatttgtaatatttgaaatacgacatattccattatgtttggtaatgaatttgctttctaactttgcatgctacatatttgcag
|||||||||||||||||||||||||||||||| |||||||| || || || || ||||||||||||||||| ||||||||| |  ||||| |  ||||| ||||||    | ||   ||  |     || |  || ||  |   ||   | | |   | ||| | |  |||  |                   
CCTGAAGATTGGGATGATGAGGAAGATGGTGAATGGACACCTCCAACAATAGCTAACCCTGAGTACAAGGGACCATGGAAGCCCAAGgttcgctgaaatgtttatt----agttaagatgat---gttatggaattttggaagttgacggttcacttaattgttcttgaaccattggcag-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207795641|gb|GD765882.1|GD765882
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAA
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAA
EST: gi|207761356|gb|GD733727.1|GD733727
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|21677154|gb|BQ629505.1|BQ629505
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGTAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|10842878|gb|BF066239.1|BF066239
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|7147106|gb|AW509028.1|AW509028
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|14259040|gb|BG881948.1|BG881948
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|208075929|gb|GD878610.1|GD878610
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|208073441|gb|GD867358.1|GD867358
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|193611626|gb|FK561293.1|FK561293
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|24135631|gb|BU926141.1|BU926141
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|208257302|gb|GE056717.1|GE056717
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|298191551|gb|HO039030.1|HO039030
EST:     CACCCCCTACCATTGCCAACCCTGATTACAAGGGCCCATGGAAGGCAAAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|120529175|gb|EH257309.1|EH257309
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|7233127|gb|AW568477.1|AW568477
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|193528649|gb|FK486867.1|FK486867
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|19938515|gb|BQ081756.1|BQ081756
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|6481781|gb|AW201052.1|AW201052
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|12689947|gb|BG156283.1|BG156283
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|207765184|gb|GD735457.1|GD735457
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|6134570|gb|AW132963.1|AW132963
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCANAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCCATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACC-ATTGAT
EST: gi|18735107|gb|BM528567.1|BM528567
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAAAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|207679603|gb|GD663553.1|GD663553
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|193643994|gb|FK593785.1|FK593785
EST:     CGCCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACT
EST: gi|193436294|gb|FK399058.1|FK399058
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAGGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|208069120|gb|GD869966.1|GD869966
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|193655943|gb|FK605299.1|FK605299
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|208156135|gb|GD952805.1|GD952805
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|19053178|gb|BM731845.1|BM731845
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|193384654|gb|FK350212.1|FK350212
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATA
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATA
EST: gi|207708279|gb|GD690423.1|GD690423
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGTATTTG
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTG-ATT-G
EST: gi|308097864|gb|HO761035.1|HO761035
EST:     CACCCCCTACCATTGCCAACCCTGATTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|5753695|gb|AI960982.1|AI960982
EST:     CACCCTCTACCATTGCCAACGCTGAGTACAATGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTAT
EST: gi|193361799|gb|FK327745.1|FK327745
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|18040310|gb|BM308604.1|BM308604
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|208074731|gb|GD870734.1|GD870734
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|208332038|gb|GE127701.1|GE127701
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|193343559|gb|FK306923.1|FK306923
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|4290764|gb|AI441665.1|AI441665
EST:     AAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: AAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|193700424|gb|FK635053.1|FK635053
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACT
EST: gi|23728381|gb|BU762243.1|BU762243
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|19453199|gb|BM954609.1|BM954609
EST:     CACCCCCTACCATTGCCAACCCTGATTACAAGGGCCCATGGAAGGCAAAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|17518857|gb|BM187899.1|BM187899
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|120493122|gb|EH221289.1|EH221289
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAAATATAAAGGACAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|208044942|gb|GD840162.1|GD840162
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|193632487|gb|FK584241.1|FK584241
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACT
EST: gi|207741492|gb|GD713862.1|GD713862
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAAATGGAAGG
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAA-TGGAAGG
EST: gi|26058830|gb|CA801744.1|CA801744
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGAT
EST: gi|7234631|gb|AW569967.1|AW569967
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
EST: gi|151411454|gb|EV281265.1|EV281265
EST:     CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAG                         AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT
genomic: CACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaa ... atatttgcagAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaaatttttattgtaaatttgtaatatttgaaatacgacatattccattatgtttggtaatgaatttgctttctaactttgcatgctacatatttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG