Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTGAGGTCATTTGGTGCACCAGCAGTTATTATTTCTATGGCAATTCAAGGAGTTTTTCGTGGAATCAAAGATACAAAAACTCCTTTATATGCTACAGgtacaccatgccagtctttatattgtatcagtatctctatccagtttattatgatgatactagatcagtgttaattggtagttaataatttgatttccat...

Basic information

species Glycine max
transcript GLYMA10G21860.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G21860.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0007g08200.t01 (Vitis vinifera), 5'ss of exon 6
ACATTGAGGTCATTTGGTGCACCAGCAGTTATTATTTCTATGGCAATTCAAGGAGTTTTTCGTGGAATCAAAGATACAAAAACTCCTTTATATGCTACAGgtacaccatgccagtctttatattgtatcagtatctctatccagtttat--tatgatgatactagatcagtgttaattggtagttaataatttgatttccat
|||||||||||| |||| || || || ||| || | ||| |||| || ||||| || ||||| ||| | |||||||||||||||||| ||||||||||  ||       ||   |  || |     |  | | | ||  |    ||| |  ||   |   | |      | | | ||||  |  ||  ||| |  ||| | |
ACATTGAGGTCACTTGGAGCTCCTGCTGTTCTTCTCTCTTTGGCCATGCAAGGGGTGTTTCGAGGATTTAAAGATACAAAAACTCCTCTATATGCTACCAgtcagtggagct--ttcttgtcccaaagtattttatcagttgcatttctgctacacttgcatttccctcgggatgattgtgacatataaatcttcttttcct

upper sequence: GLYMA10G21860.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ17255 (Selaginella moellendorffii), 5'ss of exon 4
ACATTGAGGTCATTTGGTGCACCAGCAGTTATTATTTCTATGGCAATTCAAGGAGTTTTTCGTGGAATCAAAGATACAAAAACTCCTTTATATGCTACAGgtacaccatgccagtctttatattgtatcagtatctctatccagtttattatgatgatactagatcagtgttaattggtagttaataatttgatttccat
 || |  || |  | || || || |||||| || ||||| | || |  |||||||| ||||||||  | ||||| |||||||||||| | ||||||||||||| |  |     ||  ||   || | ||  |  ||||  || |  | || ||||||||                                         
TCAATTCGGGCTCTGGGAGCTCCTGCAGTTGTTGTTTCTCTAGCTACGCAAGGAGTGTTTCGTGGCTTTAAAGACACAAAAACTCCTCTGTATGCTACAGgtaaattaattttgttctttctttctttcgtt--ctctgacctg--tgttttgatgatag----------------------------------------