Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCTCTTTTGTTCCTGCCATTTATGATGTAACTGTGGCAATTCCCAAGAGTTCACCTGCTCCTACAATGCTAAGACTCTTCAGAGGGAAATCTTCAGTGgtgagccaatcaaattgagatttagaaagaacagaaaaacctgcatctatagtcttctttttttctgaccacattatttacagaatgaaatttgactctg...

Basic information

species Glycine max
transcript GLYMA10G12560.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G12560.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv08s0007g08110.t01 (Vitis vinifera), 5'ss of exon 8
GCGCTCTTTTGTTCCTGCCATTTATGATGTAACTGTGGCAATTCCCAAGAGTTCACCTGCTCCTACAATGCTAAGACTCTTCAGAGGGAAATCTTCAGTGgtgagccaatcaaa-ttgagatttagaaagaacagaaaaacctgcatctatagtcttctttttttctgaccacattatttacagaatgaaatttgactctg---------
||| || |||||||| ||  ||||||||||||| |||||||||||||| | |   ||| | || |||||||| |||||||| |  ||| || |||| |  || ||||||  |||  ||||| ||  ||  |||          | || |||  | || | | || | |  ||  ||   |   |  |  |||||   |||          
GCGTTCATTTGTTCCAGCTGTTTATGATGTAACAGTGGCAATTCCCAAAACTCAGCCTTCACCAACAATGCTCAGACTCTTTAAGGGGCAACCTTCTGCAgtaagccaacaaaaactgagaattttaatcaac---------cgtatatatcattttgtatatt-cagtgcaacttccatgtgggtttgaatttccttctacattattga