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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTGCTAAAAGTTCCATCTTTTATGGTTGAATTTACCACTCCTATAATAAGGgttagtagagttttgttgttatcatcatgtttatagaacttcatggttttcatattttgaattccctgtttctgcag

Basic information

species Glycine max
transcript GLYMA10G11610.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G11610.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g47150.1 (Oryza sativa), 5'ss of exon 7
CCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTGCTAAAAGTTCCATCTTTTATGGTTGAATTTACCACTCCTATAATAAGGgttagtagagttttgttgttatcatcatgtttatagaacttcatggttttcatattttgaattccctgtttctgcag-----------------------------------------------------------------------------------------------
|||||||||||| || ||||| ||||||||||| || |||||||| || ||  | ||| |||| |||||  ||||||| ||||  |||||||| || | |||  | ||    | |  |||   ||  |   |    |  |||   |||| ||  || | ||      ||   |  |                                                                                                
CCACATCAAAGGCCTGTTGATCAACTTCATTCACTCCTTCTGGCCTTCTCTTATTAAAATTCCTTCTTTCTTGGTTGAGTTTATTACTCCTATTATCAAGgtaggcagctcctaggggttggtatatttcatgcttattttctgtgtttacagcttgtcaaagtatcgtacttaaaattgtcatttgaaggagtcatatccttctgtgggttacatatatttaaagcatgcttggttggacggaataataattcttgaacatatttgcacag

upper sequence: GLYMA10G11610.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G021270_T01 (Zea mays), 5'ss of exon 7
CCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTGCTAAAAGTTCCATCTTTTATGGTTGAATTTACCACTCCTATAATAAGGgt----tagtagagttttgttgttatcatcatgtttatagaacttcatggttttcatattttgaattccctgtttctgcag---------------------------------------------------------------------------------
|||||| |||||| |  |||| |||||||| || || |||||||| || || || ||||||||||||||| ||||||| || |  ||||| || || | |||    || |  |   || |   |||   ||| ||| ||    ||      ||| ||  ||   | |      || ||||                                                                                  
CCACATTAAAGGGTTGCTGATCAACTTCATCCACTCATTCTGGCCGTCTCTTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTACTCCAATCATCAAGgtagattactgtacgattttatctattgacatatttttatgtattttcaaattttattcttgatagtataccattttgcaccaaagggatttccccctgctagatatgtattttttttgtaaacaatttgttttgactgccatgatggattcacttgtctag

upper sequence: GLYMA10G11610.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0064g00560.t01 (Vitis vinifera), 5'ss of exon 7
CCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTGCTAAAAGTTCCATCTTTTATGGTTGAATTTACCACTCCTATAATAAGGgttagtagagttttgtt--gttatcatcatgttta--tagaacttcat--ggttttcatattttgaattccctgtttctgcag------------------
 ||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||||  | ||||| || |  || |||||  | | ||| ||||   ||| |||  || |  |||| ||| |  |  | ||| |   ||| ||| | |        || | | ||   |                   
TCACATCAAAGGACTATTGATAAATTTCATTCATTCATTCTGGCCTTCACTGCTAAAAATTCCATCTTTCTTAGTTGAGTTCATAACACCTATTGTGAAGgtcagtatcttttagtttggtcagtatcaggttcagttttatcttgaatgggtcttcttttagaaggaaccatatgtcattaatatgtatataatgtacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207757320|gb|GD727128.1|GD727128
EST:     TGCTAAAAGTTCCATCTTTTATGGTTGAATTTACCACTCCTATAATAAGG                         GCTTTTCATTCAAACGGGACAAAAATTATCATTTTATTCCATGCCTGAATA
genomic: TGCTAAAAGTTCCATCTTTTATGGTTGAATTTACCACTCCTATAATAAGGgttagtagag ... gtttctgcagGCTTTTCATTCAAACGGGACAAAA-TTATCATTTTATTCCATGCCTGAATA
EST: gi|208210421|gb|GE015612.1|GE015612
EST:     TACTAAAAGTTCCATCTTTTATGGTTGAATTTACCACTCCCATAATAAGG                         GCTTTTCATTCAAACGGGACAAAATTATCATTTTATTCCATGCCTGAATAT
genomic: TGCTAAAAGTTCCATCTTTTATGGTTGAATTTACCACTCCTATAATAAGGgttagtagag ... gtttctgcagGCTTTTCATTCAAACGGGACAAAATTATCATTTTATTCCATGCCTGAATAT