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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAAGGCGTCCAGATTTGCGTCTCATTCTGATGAGTGCCACCATTAATGCTGATATGTTCTCTAAATACTTTGCCAATGCCCCAACAATGCACATACCGgtatgaattattttatatttcacattatcaatttaaatttgtggatttcaatgcaaataaagtatttctgttttttaattatatttggacatgtgtcag

Basic information

species Glycine max
transcript GLYMA10G10180.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G10180.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G35920.1 (Arabidopsis thaliana), 5'ss of exon 7
TCCAAGGCGTCCAGATTTGCGTCTCATTCTGATGAGTGCCACCATTAATGCTGATATGTTCTCTAAATACTTTGCCAATGCCCCAACAATGCACATACCGgtatgaattattttatatttcacattatcaatttaaatttgtggatttcaatgcaaataaagtatttctgttttttaattatatttggacatgtgtcag
|||  | || |||||||||||||| |||||||||||||| || ||||| ||||| |||||||| | ||||||||  ||  | || || |||||||| ||||||||  |  || || ||        |   | ||   ||| ||   |   ||     | |  ||| ||  ||||  | ||||     |           
TCCTCGACGCCCAGATTTGCGTCTTATTCTGATGAGTGCTACGATTAACGCTGACATGTTCTCAACATACTTTGGGAACTCTCCCACTATGCACATCCCGgtatgtctagttgtaaat------ccagtgactt--gtttatga--tctgatattcgtgacttatctc--ttttcaacttattgccag-----------

upper sequence: GLYMA10G10180.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0032g01230.t01 (Vitis vinifera), 5'ss of exon 7
TCCAAGGCGTCCAGATTTGCGTCTCATTCTGATGAGTGCCACCATTAATGCTGATATGTTCTCTAAATACTTTGCCAATGCCCCAACAATGCACATACCGgtat---gaattattttatatttcacattatcaatttaaatttgtggatttcaatgcaaataaagtatttctgttttttaat--tatatttggacatg-tgtcag
|||  |||| |||||| ||||||| ||||| |||||||| ||||||||||||||  ||||||| ||||||||||  ||||||||||| || || ||||||||||   | ||  |||||  | |     |        |  | | | ||  | | |  | | | | |  |    || |  |||  |||  ||  | ||| || |||
TCCTCGGCGACCAGATCTGCGTCTTATTCTAATGAGTGCTACCATTAATGCTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCGgtattgtggatcttttta-gtcttgagctgctgggacatgtgttttgaacttattcaacacatatttgtgtatttatgcaatattatccttcaatatgctggcag

upper sequence: GLYMA10G10180.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ10915 (Selaginella moellendorffii), 5'ss of exon 7
TCCAAGGCGTCCAGATTTGCGTCTCATTCTGATGAGTGCCACCATTAATGCTGATATGTTCTCTAAATACTTTGCCAATGCCCCAACAATGCACATACCGgtatgaattattttatatttcacattatcaatttaa-atttgtggatttcaatgcaaataaagtatttctgttttttaattatatttggacatgtgtcag
 || | | | ||  |  | ||||||||||| ||||| || || || ||||| ||||||||||| ||||| |||| |||||| || |   ||||||| |||||  | | | || | | |    | |    |  | ||  | |  | ||| | |                                                
ACCGAAGAGGCCTAAGCTACGTCTCATTCTCATGAGCGCAACTATCAATGCCGATATGTTCTCCAAATATTTTGGCAATGCACCGAAGCTGCACATTCCGgttagcact-ttctttttcctgcgtgtgtagctaaacgtgttcgaattgccag-----------------------------------------------

upper sequence: GLYMA10G10180.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ25900 (Selaginella moellendorffii), 5'ss of exon 5
TCCAAGGCGTCCAGATTTGCGTCTCATTCTGATGAGTGCCACCATTAATGCTGATATGTTCTCTAAATACTTTGCCAATGCCCCAACAATGCACATACCGgtatgaattattttatatttcacattatcaatttaa-atttgtggatttcaatgcaaataaagtatttctgttttttaattatatttggacatgtgtcag
 || | | | ||  |  | ||||||||||| ||||| || || || ||||| ||||||||||| ||||| |||| |||||| || |   ||||||| |||||  | | | || | | |    | |    |  | ||  | |  | ||| | |                                                
ACCGAAGAGGCCTAAGCTACGTCTCATTCTCATGAGCGCAACTATCAATGCCGATATGTTCTCCAAATATTTTGGCAATGCACCGAAGCTGCACATTCCGgttagcact-ttctttttcctgcgtgtgtagctgaacgtgttcgaattgccag-----------------------------------------------