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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAATGCACATTCAATCTAGAATTAATTGGAGTGAAGAAAAACCCCAATGGCCCCATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttctgctgtttactcttctaaattctaattgatggttatttccactctcacaatttaaggcatttgagttgatatgcactgatttataatgttgctgatatgcactgatgtatatgtagctgtaatattatcaaaaatgtgttgcttatttctttgcatactgcaatttcag

Basic information

species Glycine max
transcript GLYMA10G10000.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G10000.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os07g47580.1 (Oryza sativa), 5'ss of exon 7
TAAATGCACATTCAATCTAGAATTAATTGGAGTGAAGAAAAACCCCAATGGCCCCATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttctgctgtttactcttctaaattctaattgatggttatttccactctcacaatttaaggcatttgagttgatatgcactgatttataatgttgctgatatgcactgatgtatatgtagctgtaatattatcaaaaatgtgttgcttatttctttgcatactgcaatttcag
 ||||| || ||||| || ||  |||||   |||||||||||||| ||||| |  |||||| |  ||||||||||  | || ||||||||||| |||||||||| ||     ||    | | || ||   ||   | |  || |  || |       ||    | |||  || |||||   | | ||| ||||||       || ||                                                                     
GAAATGTACTTTCAACCTTGACATAATTTCTGTGAAGAAAAACCCAAATGGTCAAATGTACTCTACTCTTGGTGTTTTGACAAGGGGAACTATCATTGAGgtatgtcaagaattc-tgcctgtatatgaaaacaaaag--taatctcatttaagttgtt---agtattacagctgatagtgaattattgataatgaaaacttta-gc---------------------------------------------------------------------

upper sequence: GLYMA10G10000.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G009876_T01 (Zea mays), 5'ss of exon 7
TAAATGCACATTCAATCTAGAATTAATTGGAGTGAAGAAAAACCCCAATGGCCCCATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttctgctgtttactcttctaaattctaattgatggttatttccactctcacaatttaaggcatttgagttgatatgcactgatttataatgttgctgatatgcactgatgtatatgtagctgtaatattatcaaaaatgtgttgcttatttctttgcatactgcaatttcag
 || ||||| ||||| || ||  |||||   |||||||||||||| ||||| || |||||||| ||||||||||| || || |||||||| || ||||||||||    ||     | | || ||    | | || ||| |  |  ||  | |  |    ||  | |  |   ||  | |       ||  | |||         |  ||||   | ||| |   ||||    |  | ||||| || ||||||         ||  |    ||||||
GAAGTGCACTTTCAACCTTGACATAATTTCTGTGAAGAAAAACCCAAATGGTCCAATGTACACTTCTCTTGGTGTTATGACAAGGGGAACGATCATTGAGgtat----gccaagcattttttta----ccattttatg-tagtaccctgtgtagctgacta--gtaactatattagttt-------ttcgtcatg--------gtttactgggat-tatctctttgtacccct--cgaaaat-tgctgcttaca-------atggtcttctttcag

upper sequence: GLYMA10G10000.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G174204_T01 (Zea mays), 5'ss of exon 7
TAAATGCACATTCAATCTAGAATTAATTGGAGTGAAGAAAAACCCCAATGGCCCCATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttctgctgtttactcttctaaattctaattgatggttatttccactctcacaatttaaggcatttgagttgatatgcactgatttataatgttgctgatatgcactgatgtatatgtagctgtaat--attatcaaaaatgtgttgcttatttctttgcatactgcaatttcag
 || ||||| ||||| || ||  |||||   |||||||||||||| ||||| || |||||||| ||||||||||| || || |||||||| || ||||||||| | |     |||   |   | | || || |  ||  || | |  | |   ||  | | |||   |  ||      | ||||||  |    | ||  |   |  | ||    |          | |||   |  ||| ||  || ||  ||                         
GAAGTGCACTTTCAACCTTGACATAATTTCTGTGAAGAAAAACCCAAATGGTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAGgtactccaagcatttttaccagtta-ttgtagtcaatacttttgtgtagtg--actgtattaggtgct--agccatggttcactgagattacctctttatatcaccccctcccctcccctctatcgaaattgctgctcacaatagtattctttcag----------------------

upper sequence: GLYMA10G10000.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ37687 (Selaginella moellendorffii), 5'ss of exon 7
TAAATGCACATTCAATCTAGAATTAATTGGAGTGAAGAAAAACCCCAATGGCCCCATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttctgctgtttactcttctaaattctaattgatggttatttccactctcacaatttaaggcatttgagttgatatgcactgatttataatgttgctgatatgcactgatgtatatgtagctgtaatattatcaaaaatgtgttgcttatttctttgcatactgcaatttcag
 || || |||||| | || ||| |  |||| |||||||||||||| || |||||||||||||| || || ||||| || || |||||||| || || ||||||  |     | || |  |||  || | |  ||     |         |  ||                                                                                                                          
CAAGTGTACATTCCAGCTTGAAATCCTTGGCGTGAAGAAAAACCCGAACGGCCCCATGTACACGTCCCTGGGTGTGATAACTAGGGGAACGATCATCGAGgtaagttgatgggtttcgtttcctaagtttttttatcattcgaaatgttttccag-------------------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA10G10000.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ15002 (Selaginella moellendorffii), 5'ss of exon 7
TAAATGCACATTCAATCTAGAATTAATTGGAGTGAAGAAAAACCCCAATGGCCCCATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttctgctg-tttactcttctaaattctaattgatggttatttccactctcacaatttaaggcatttgagttgatatgcactgatttataatgttgctgatatgcactgatgtatatgtagctgtaatattatcaaaaatgtgttgcttatttctttgcatactgcaatttcag
 || || |||||| | || ||| |  |||| |||||||||||||| || |||||||||||||| || || ||||| || || |||||||| || || ||||||  |     | |||  | | ||||  | |  |  ||  ||        | || ||                                                                                                                        
CAAGTGTACATTCCAGCTTGAAATCCTTGGTGTGAAGAAAAACCCGAACGGCCCCATGTACACGTCCCTGGGTGTGATAACTAGGGGAACGATCATCGAGgtaagttgatgggttttgtttcctaagcttttttatatcattcgaaatgttttc-cag-----------------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208320447|gb|GE122462.1|GE122462
EST:     GGGGAACTATAATTGAG                         GTGAATGTCAGNGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GGGGAACTATAATTGAGgtatttctgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|14258675|gb|BG881583.1|BG881583
EST:     GCCCCATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GCCCCATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttctgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|207682562|gb|GD664877.1|GD664877
EST:     GGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GGGGAACTATAATTGAGgtatttctgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|31459692|gb|CD401720.1|CD401720
EST:     GCCCCATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GCCCCATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttctgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|22931857|gb|BU548996.1|BU548996
EST:     GCCCCATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GCCCCATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttctgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|151408011|gb|EV277826.1|EV277826
EST:     GCCCTATGTATACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GCCCCATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttctgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|23730169|gb|BU763189.1|BU763189
EST:     GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GCCCCATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttctgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG