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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTGCCTGCTGGCAAGACCATTGCTTTGGTTGGAAGCAGTGGCTCAGGCAAAAGCACAGTTGTTTCCCTCATTGAGAGATTCTATGATCCTTCTTCTGgtaaaactgtgaactcattcagctgtctttgaaaaccaactggattaattagacattcaacttgtttattgagagtttgaaattgaaaatgtgctagttactagttagtgatctgatcatgtgattagtgttactaacttaactgttttgcag

Basic information

species Glycine max
transcript GLYMA10G06220.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G06220.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G36910.1 (Arabidopsis thaliana), 5'ss of exon 6
AATGTGCCTGCTGGCAAGACCATTGCTTTGGTTGGAAGCAGTGGCTCAGGCAAAAGCACAGTTGTTTCCCTCATTGAGAGATTCTATGATCCTTCTTCTGgtaaa-actgtgaactcattcagctgtctttgaaaaccaactggattaattagacattcaacttgtttattgagagtttgaaattgaaaatgtgctagttactagttagtgatctgatcatgtgattagtgttactaacttaactgttttgcag
  ||| |||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||| ||||| || || ||| | || || || ||    || ||| || | | | |||  |||| | |   ||| ||      |||  ||  |    ||||     | || ||| | |   ||  || |    ||                                                              
TCTGTTCCTGCTGGGAAGACCATTGCTTTGGTTGGGAGCAGTGGTTCAGGAAAAAGCACAGTCGTTTCGCTTATAGAGCGGTTTTACGACCCGAACTCAGgttaacaatcttaac--attctgttacatttcaag-----ctgttttgttcgagcatt-gttattttaattaacacggtgttatcgtctctgcag-----------------------------------------------------------

upper sequence: GLYMA10G06220.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0007g05060.t01 (Vitis vinifera), 5'ss of exon 6
AATGTGCCTGCTGGCAAGACCATTGCTTTGGTTGGAAGCAGTGGCTCAGGCAAAAGCACAGTTGTTTCCCTCATTGAGAGATTCTATGATCCTTCTTCTGgtaaaa-ctgtgaactcattcagctgtctttgaaaaccaactggattaattagacattcaac-ttgtttattgagagtttgaaattgaaaatgtgctagttactagttagtgatctgatcatgtgattagtgttactaacttaactgttttgcag
|| || || || || |||||||| ||  | || |||||||||||||| || || ||||| || || || |||||||||||||||||||||||  | || ||||||| |     |   |||   |  |||  |  | ||||  | | ||| |  |  | |||  ||  || ||   |  ||   |||   | || |  | ||  || |                                                
AACGTCCCAGCCGGAAAGACCATCGCCCTTGTAGGAAGCAGTGGCTCTGGAAAGAGCACTGTGGTCTCTCTCATTGAGAGATTCTATGATCCCACCTCAGgtaaaaaccacacaaaaattt--cattctccgtgatccaatagtactaactcaatttgcaaaattactttttataaaatt---atttctagtgggtgaatt--taat------------------------------------------------