Sequence
atgc intronic sequence ATGC exonic sequenceGATGGAAAAACCTTACCAAATGGACCTGTTGTTATATCACCTGATGGATTATTTCCCTCGCTTTACCGAGAAGgtggggcacctctaacctgagattagttgtgatggatactgcaatatgttgttcatgtagccagttattgatgttataataaagatttcactttttgctt...
Basic information
species | Glycine max |
transcript | GLYMA10G05320.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G05320.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os05g38710.1 (Oryza sativa), 5'ss of exon 7
GATGGAAAAACCTTACCAAATGGACCTGTTGTTATATCACCTGATGGATTATTTCCCTCGCTTTACCGAGAAGgtgg-ggcacctct--aacctgagattagttgtgatgga-tactgcaatatgttgttcatgtagccagttattgatgttataataaagatttcactttttgctt
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GATGGGAAGGTATTGCCTAATGGACCTGTTGTGATTTCACCTGATGGTTTATTTCCGTCATTGTACCGGGAAGgtaacatcatctctccaatatttacatatccatattcttctattatgacttgctgaata-atgattagccttcactgaactactaggatggtc--tgtataat-
upper sequence: GLYMA10G05320.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G099481_T01 (Zea mays), 5'ss of exon 7
GATGGAAAAACCTTACCAAATGGACCTGTTGTTATATCACCTGATGGATTATTTCCCTCGCTTTACCGAGAAGgtggggcacctctaacctgagattagttgtgatg-gatactgcaatatgttgttcatgtagccagttattgatgttataataaagatttcactttttgctt-----------------------------------------------------------------------------------------------
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GATGGGAAAGCACTACCCAATGGGCCTGTTGTAATTTCACCTGATGGCTTGTTTCCTTCACTCTACCGAGAAGgtg----acattttgtttgcagttagttgtatcctgacatagttgttcactatgacttggactaatttgatttgccatatcaatattttccagtaatgtggcctctggcttcatagaaaatcaactgctaatggcttaaaataatgctgctgttattgattttaagcatgatctaatattcctctgtttttcttag
upper sequence: GLYMA10G05320.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0040g02800.t01 (Vitis vinifera), 5'ss of exon 6
GATGGAAAAACCTTACCAAATGGACCTGTTGTTATATCACCTGATGGATTATTTCCCTCGCTTTACCGAGAAGgtggggcacctctaacctgagattagttgtgatggatactgcaatatgttgttca--tgtagccagttattgatgttat-aataaagattt-cactttttgctt-
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GATGGAAAAGCTTTACCTAATGGGCCTATTGTTATTTCACCTGATGGGTTATTTCCTTCATTATACCGAGAAGgtgagatctttct---ctttggataattgt--ttgctacttctaatcatcgatctgctttagcttcacataaataccgtcaatagttatttatagttctaggtccMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208325427|gb|GE124093.1|GE124093EST: ACCTGTTGTTATATCACCTGATGGATTATTTCCCTCGCTTTACCGAGAAG TGATAAGAAGAGCACCTCACG
genomic: ACCTGTTGTTATATCACCTGATGGATTATTTCCCTCGCTTTACCGAGAAGgtggggcacc ... ctgatggaagTGATAAGAAGAGCACCTCACG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATGGAAAAACCTTACCAAATGGACCTGTTGTTATATCACCTGATGGATTATTTCCCTCGCTTTACCGAGAAGgtggggcacctctaacctgagattagttgtgatggatactgcaatatgttgttcatgtagccagttattgatgttataataaagatttcactttttgctt
- - - - - - - - - - - - - - - - - - - - - GATGGA