Sequence
atgc intronic sequence ATGC exonic sequenceCCTTAATAAAGGAATTAGACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCTTCAGCTGCCTATGAAGCTATCAAGCATTCCATgtaagtaacagccatcggattcatgattatttcaaggtttcaattttaatacttatgtttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgaag
Basic information
species | Glycine max |
transcript | GLYMA10G05130.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G05130.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os05g02310.1 (Oryza sativa), 5'ss of exon 8
CCTTAATAAAGGAATTAGACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCTTCAGCTGCCTATGAAGCTATCAAGCATTCCATgtaagtaacagccatcggattcatgattatttcaaggtttcaattttaatacttatgtttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgaag
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------------------ACAAGAAGAATGAGAACAAGGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagta-----cttcacttgcataagtactacaacat---------actgtacatgtttgtgtaaaatcacatcaa----gctgactcttaaccatgttgatgttgccattcag
upper sequence: GLYMA10G05130.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G137930_T02 (Zea mays), 5'ss of exon 8
CCTTAATAAAGGAATTAGACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCTTCAGCTGCCTATGAAGCTATCAAGCATTCCATgtaagtaacagccatcggattcatgattatttcaaggtttcaattttaatacttatgtttttattcat-gcgcaagaatgatatgaagtttaaaacctttttattttgttgtgaag
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------------------ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttg-atttatcgcaactgtg-tcatctcaacacgt--atcctcgtttcgaccttcaagctaaccgcccagcaatg-tgttgttcttccatccacag---------------
upper sequence: GLYMA10G05130.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0040g02470.t01 (Vitis vinifera), 5'ss of exon 8
CCTTAATAAAGGAATTAGACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCTTCAGCTGCCTATGAAGCTATCAAGCATTCCATgtaagtaacagccatcggattcatgattatttcaaggtttcaattttaatacttatgtttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgaag
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------------------ACAAGAAAAATGAGAACAAGGAAGTTGCAGTTAACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgttatgatcctttgtctccatttatttatagtttgtgtatgttaacatataccgatgtgtgtgtgatatacgcatatagaataaagaatataga---------------
upper sequence: GLYMA10G05130.2 (Glycine max), 5'ss of exon 7
lower sequence: PP1S552_1V6.1 (Physcomitrella patens), 5'ss of exon 8
CCTTAATAAAGGAATTAGACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCTTCAGCTGCCTATGAAGCTATCAAGCATTCCATgtaagtaacagccatcggattcatgattatttcaaggtttcaattttaatacttatgtttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgaag
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------------------ACAAGAAGAATGAGAACAAGGAAGTAACGGTGGATAACTTCCTGGGCCACGAAGCTGCGATTCAAGCCATCAGTCACTCCATgtaagcgttc-ttgtcgaga--attcctatttgatgtgttgagatgtgttgga-agatggcatttcctatgaagatgcaatttga---ttgccatggagctgatttg--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151399291|gb|EV269162.1|EV269162EST: AACGACTTTCTTCCTGCTTCAGCTGCCTATGAAGCTATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTATAGCTTGGA
genomic: AACGACTTTCTTCCTGCTTCAGCTGCCTATGAAGCTATCAAGCATTCCATgtaagtaaca ... tgttgtgaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGAGCTTGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTTAATAAAGGAATTAGACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCTTCAGCTGCCTATGAAGCTATCAAGCATTCCATgtaagtaacagccatcggattcatgattatttcaaggtttcaattttaatacttatgtttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC