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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGTTCCTTCTGCTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaattatgagtgtctgattctaatgctttcaaatggtcttccaaatattttaatgaattgtgcagattaatgttttgctaacattttggtgatttgcacag

Basic information

species Glycine max
transcript GLYMA10G03740.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G03740.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g06740.1 (Oryza sativa), 5'ss of exon 7
AGCTGTTCCTTCTGCTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtg-agagaattatgagtgtctgattctaatgctttcaaatggtcttccaaatattttaatgaattgtgcagattaatgttttgctaacattttggtgatttgcacag
|||||| || ||||| || || || |||||||| || |||||||||||||||||||| || |||||  ||   |  | | |  |||   |  | || |    ||  |     ||| ||  ||  |   ||||||||                                    
AGCTGTACCATCTGCCGTTTTCTCCCAACCACCCATCGGACAAGTTGGTCTTACTGAAGAGCAGgtatagcatacgacgcgcatctatataaagtgatgcacaaaagaaagtcaattaaatttgtattttgtgcag------------------------------------

upper sequence: GLYMA10G03740.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G172322_T02 (Zea mays), 5'ss of exon 7
AGCTGTTCCTTCTGCTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaattatgagtgtctgattctaatgctttcaaatggtcttccaaatattttaatgaattgtgcagattaatgttttgctaacattttggtgatttgcacag
|||| | ||||||||||| || || ||||||||||| ||||||||||||||||||||||| |||||||    |  ||||    |||  ||  ||  | ||| |   |    || | |       ||| |    ||||   | ||||||                       
AGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCTTACTGAGGAGCAGgtgatgacac-atga---cctgcatc--atagtgtcataacttgcagcagaca-------gaaattcatagatgcttattttgcag---------------------

upper sequence: GLYMA10G03740.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G172322_T03 (Zea mays), 5'ss of exon 1
------------------------------------AGCTGTTCCTTCTGCTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaattatgagtgtctgattctaatgctttcaaatggtcttccaaatattttaatgaattgtgcagattaatgttttgctaacattttggtgatttgcacag
                                    |||| | ||||||||||| || || ||||||||||| ||||||||||||||||||||||| |||||||    |  ||||    |||  ||  ||  | ||| |   |    || | |       ||| |    ||||   | ||||||                       
GACCACTCTTCCATTGTGAATTACAATTTTTGGCAGAGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCTTACTGAGGAGCAGgtgatgacac-atga---cctgcatc--atagtgtcataacttgcagcagaca-------gaaattcatagatgcttattttgcag---------------------

upper sequence: GLYMA10G03740.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0141g00390.t01 (Vitis vinifera), 5'ss of exon 7
AGCTGTTCCTTCTGCTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaattatgagtgtctgattctaatgctttcaaatggtcttcca-----aatattttaatgaattgtgcagattaatgttttgctaacattttggtgatttgcacag
|||||| || |||||||| ||||| || ||||| ||||||||||||||||||||||| ||||||||||    | |     | | |  ||  |     |   | |  ||          ||||||| ||| | || || ||                                    
AGCTGTACCATCTGCTGTGTTTTCCCAGCCACCTATTGGACAAGTTGGTCTTACTGAAGAACAGgtgatgccaattctcttctgtatttgcagcagctgagattcatcccttgcgattaatatttgaatcatttttgtag------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192299302|gb|FG988702.1|FG988702
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
EST: gi|22523475|gb|BU082286.1|BU082286
EST:     GACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
genomic: GACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
EST: gi|15286301|gb|BI470192.1|BI470192
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
EST: gi|11273725|gb|BF324101.1|BF324101
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAA                         GCTGTTCAACAATATGGAGATATTGACATCTTCACTGCCAATGTTACGCCA
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
EST: gi|19347352|gb|BM892232.1|BM892232
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
EST: gi|12496411|gb|BG047051.1|BG047051
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
EST: gi|16347393|gb|BI972988.1|BI972988
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA