1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TATGGGAGCTTTTCTGCTGAGCGCAGGGACAAAAGgtattcttttaacatgcaatcgctgtatctatccccccctctttctttgttgatgaatgccatttccacttcttgaaaattagaataatgcttctttctaactttatatcccttcctccttcacttctgaag
species | Glycine max |
transcript | GLYMA10G01550.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TATGGGAGCTTTTCTGCTGAGCGCAGGGACAAAAG GAAAGAGATACAGCTTGCCAAATTCAAGGATAATGATTCATCAACCGCTTGEST: gi|11689956|gb|BF597632.1|BF597632
genomic: TATGGGAGCTTTTCTGCTGAGCGCAGGGACAAAAGgtattctttt ... acttctgaagGAAAGAGATACAGCTTGCCAAATTCAAGGATAATGATTCATCAACCGCTTG
EST: TATGGGAGCTTTTCTGCTGAGCGCAGGGACAAAAG GAAAGAGATACAGCTTGCCAAATTCAAGGATAATGATTCATCAACCGCTTGEST: gi|31561455|gb|CD487293.1|CD487293
genomic: TATGGGAGCTTTTCTGCTGAGCGCAGGGACAAAAGgtattctttt ... acttctgaagGAAAGAGATACAGCTTGCCAAATTCAAGGATAATGATTCATCAACCGCTTG
EST: TATGGGAGCTTTTCTGCTGAGCGCAGGGACAAAAG GAAAGAGATACAGCTTGCCAAATTCAAGGATAATGATTCATCAACCGCTTGEST: gi|16279786|gb|BI943616.1|BI943616
genomic: TATGGGAGCTTTTCTGCTGAGCGCAGGGACAAAAGgtattctttt ... acttctgaagGAAAGAGATACAGCTTGCCAAATTCAAGGATAATGATTCATCAACCGCTTG
EST: TATGGGAGCCTTTCTGCTGAGCGCAAGGACCAAAAG GAA-GAGATACAGCTTGCCAEST: gi|209714325|gb|BW665587.1|BW665587
genomic: TATGGGAGCTTTTCTGCTGAGCGCAGGGAC-AAAAGgtattctttt ... acttctgaagGAAAGAGATACAGCTTGCCA
EST: TATGGGAGCTTTTCTGCTGAGCGCAGGGACAAAAG GAAAGAGATACAGCTTGCCAAATTCAAGGATAATGATTCATCAACCGCTTG
genomic: TATGGGAGCTTTTCTGCTGAGCGCAGGGACAAAAGgtattctttt ... acttctgaagGAAAGAGATACAGCTTGCCAAATTCAAGGATAATGATTCATCAACCGCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGGGAGCTTTTCTGCTGAGCGCAGGGACAAAAGgtattcttttaacatgcaatcgctgtatctatccccccctctttctttgttgatgaatgccatttccacttcttgaaaattagaataatgcttctttctaactttatatcccttcctccttcacttctgaag
- - GGAGCT
- - GAGCTT