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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgttcattctcaacctggaatttctgttgtctgtttttcactttctatctgaattctgattgttatcatgaataaattttgcacttatttgacag

Basic information

species Glycine max
transcript GLYMA10G01280.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G01280.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ07216 (Selaginella moellendorffii), 5'ss of exon 7
GTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgttcattctcaacctggaatttctgttgtctgtttttcactttctatctgaattctgattgttatcatgaataaattttgcacttatttgacag
|| ||||| ||||| |||||||| ||| | ||||||||||||||||| |||||||||||  || |  |  |||   |||   |  |   || |    | | || |  |      | |   ||  |  |  || |                     
GTAAATCCACACACACACCAGCTCAAGCTCTGTGACTTTGGGAGTGCTAAAGTCTTGgtgggtgc--ttacaaataggatccttggaattcagcagctgatttgcgtttcctgcttttcctggcaaaac-aacag--------------------

upper sequence: GLYMA10G01280.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ07923 (Selaginella moellendorffii), 5'ss of exon 7
GTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgttcattctcaacctggaatttctgttgtctgtttttcactttctatctgaattctgattgttatcatgaataaattttgcacttatttgacag
|| ||||| ||||| |||||||| ||| | ||||||||||||||||| |||||||||||  || |  |  |||   |||   |  |   || |    | | || |  |      | |  |||  |  |  || |                     
GTAAATCCACACACACACCAGCTCAAGCTCTGTGACTTTGGGAGTGCTAAAGTCTTGgtgggtgc--ttacaaataggatccttggaattcagcagctgatttgcgtttcctgcttttcttggcaaaacaaacag--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193717136|gb|FK652146.1|FK652146
EST:     CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTG                         GTCAAAGGGGAACCAAACATAT
genomic: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgttcat ... tatttgacagGTCAAAGGGGAACCAAACATAT
EST: gi|208333681|gb|GE129554.1|GE129554
EST:     CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTG                         GTCAAAGGG-AACCAAACATATCTTACATCTGCTCTAGGTACTATAGAGCA
genomic: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgttcat ... tatttgacagGTCAAAGGGGAACCAAACATATCTTACATCTGCTCTAGGTACTATAGAGCA
EST: gi|208090264|gb|GD885285.1|GD885285
EST:     CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTG                         GTCAAAGGGGAACCAAACATATCTTACATCTGCTCTAGGTACTATAGAGCA
genomic: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgttcat ... tatttgacagGTCAAAGGGGAACCAAACATATCTTACATCTGCTCTAGGTACTATAGAGCA
EST: gi|207766685|gb|GD738313.1|GD738313
EST:     CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTG                         GTCAAAGGGGAACCAAACATATCTTACATCTGCTCTAGGTACTATAGAGCA
genomic: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgttcat ... tatttgacagGTCAAAGGGGAACCAAACATATCTTACATCTGCTCTAGGTACTATAGAGCA
EST: gi|151399753|gb|EV269624.1|EV269624
EST:     CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTG                         GTCAAAGGGGAACCAAACATATCTTACATCTGCTCTAGGTACTATAGAGCA
genomic: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgttcat ... tatttgacagGTCAAAGGGGAACCAAACATATCTTACATCTGCTCTAGGTACTATAGAGCA
EST: gi|193317982|gb|FK284636.1|FK284636
EST:     CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAA-GTCTTG                         GTCAAAGGGGAACCAAACATATCTTACATCTGCTCTAGGTACTATAGAGCA
genomic: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgttcat ... tatttgacagGTCAAAGGGGAACCAAACATATCTTACATCTGCTCTAGGTACTATAGAGCA