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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCAAAGATGTTTGGGTGATGAATGTTGTACCTCGTGATGGACCTAACACACTAAAGCTTATATATGACAGAGGCCTCATAGGGTCTATCCATGACTGgtattaaaacttgattttcctgaagcataaatttattgcatctttgatatctttttatgcatttgattcatttcaccttttttgtctcatttgatgatat...

Basic information

species Glycine max
transcript GLYMA10G00880.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G00880.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os10g33720.1 (Oryza sativa), 5'ss of exon 7
GAGGCAAAGATGTTTGGGTGATGAATGTTGTACCTCGTGATGGACCTAACACACTAAAGCTTATATATGACAGAGGCCTCATAGGGTCTATCCATGACTGgtattaaaacttgattttcctgaagcataaatttattgcatctttgatatctttttatgc--atttgattcatttcaccttttttgtctcatttgatgatat
  |  || ||||| ||||| ||||||||||| || | ||||||||| | ||| || ||| | || ||||||||||| || ||||| ||||  ||||||||||||      ||   | |   |||   |    ||     |||  |  |      ||||||   |||| |   ||    |   |  ||  |  |     |   
AGGAAAAGGATGTATGGGTCATGAATGTTGTTCCACATGATGGACCAAGCACTCTCAAGATAATCTATGACAGAGGGCTTATAGGTTCTACTCATGACTGgtatgtgtcattttatataaagaaaattgtgcttggcatatcagtagttgagcattatgctagtttgttaggttaaggcaactcagtagctctctgccac--

upper sequence: GLYMA10G00880.2 (Glycine max), 5'ss of exon 7
lower sequence: AT4G14360.2 (Arabidopsis thaliana), 5'ss of exon 7
GAGGCAAAGATGTTTGGGTGATGAATGTTGTACCTCGTGATGGACCTAACACACTAAAGCTTATATATGACAGAGGCCTCATAGGGTCTATCCATGACTGgta----ttaaaacttgattttcctgaagcataaatt--tattgcatc---tttgatatctttt-tatgcatttgattcatttcaccttttttgtctcatttgatgatat
 ||  |||||||| ||||| ||||||||||| |||   || ||||||||||| || || || ||||||||||||||  | || ||  |  | |||  |||||     || | |||| | ||| |  ||  | | |||  |  | || |   ||||| || |||   |||  ||||| |  |  |||                        
AAGAAAAAGATGTCTGGGTAATGAATGTTGTTCCTGAGGACGGACCTAACACGCTTAAACTGATATATGACAGAGGTTTAATGGGCGCGGTTCATAGCTGgtcagtttttatacttaaattttcgaaatgacacattatttctacaccgaatttgaaatttttagcatgtttttgaat-gtaccacag----------------------

upper sequence: GLYMA10G00880.2 (Glycine max), 5'ss of exon 7
lower sequence: AT3G23300.1 (Arabidopsis thaliana), 5'ss of exon 7
GAGGCAAAGATGTTTGGGTGATGAATGTTGTACCTCGTGATGGACCTAACACACTAAAGCTTATATATGACAGAGGCCTCATAGGGTCTATCCATGACTGgtattaaaacttgattttcctgaagcataaatttattgcatctttgatatctttttatgcatttgattcatttcaccttttttgtctcatttgatgatat
 ||  |||||||||||||| ||||||||||| |||   || ||||| ||||| || || || ||||| ||||||||||| || ||  || | |||  |||||            |||  |     | | ||  | |  | |  |  | |||  ||  |  || ||   |  ||    ||| | |||| ||   ||   | 
AAGAAAAAGATGTTTGGGTTATGAATGTTGTTCCTGAAGACGGACCAAACACGCTTAAACTAATATACGACAGAGGCCTGATGGGTGCTGTTCATAGCTGgt---------cagtttctc-----ccttaacctttcacttaatcaaaatccattagtatatatgtgcctcttatgatttatcgtctgataatattgcag

upper sequence: GLYMA10G00880.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv05s0049g01180.t01 (Vitis vinifera), 5'ss of exon 7
GAGGCAAAGATGTTTGGGTGATGAATGTTGTACCTCGTGATGGACCTAACACACTAAAGCTTATATATGACAGAGGCCTCATAGGGTCTATCCATGACTGgtat---taaaacttgattttcctgaagcataaatttattgcatctttgatatctttttatgcatttgattcatttcaccttttttgtctcatttgatgatat
  ||||| ||||||||||||||||||||||| |||   ||||||||||||||||| || || || ||||||||||| || |||||  |||||||| ||||||||   || |  ||||  ||  |  |   ||  ||  ||||| | ||    |||  | ||   |||||      |   |            ||||   |   
AGGGCAAGGATGTTTGGGTGATGAATGTTGTCCCTGAAGATGGACCTAACACACTTAAACTGATCTATGACAGAGGTCTAATAGGCACTATCCATAACTGgtatgcatatattttgaagttatttta-tgtattttatttgcaaccttagggtctggtaatatttttgaaaacagttgtcaaaaaaacagtttttgggaac--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10843342|gb|BF066645.1|BF066645
EST:     ACACTAAAGCTTATATATGACAGAGGCCTCATAGGGTCTATCCATGACTG                         GTGTGAAGCATATTCAACATACCCCCGGACTTATGATTTACTCCATGCATG
genomic: ACACTAAAGCTTATATATGACAGAGGCCTCATAGGGTCTATCCATGACTGgtattaaaac ... cttttaacagGTGTGAAGCATATTCAACATACCCCCGGACTTATGATTTACTCCATGCATG
EST: gi|14990820|gb|BI316493.1|BI316493
EST:     ACACTAAAGCTTATATATGACAGAGGCCTCATAGGGTCTATCCATGACTG                         GTGTGAAGCATATTCAACATACCCCCGGACTTATGATTTACTCCATGCATG
genomic: ACACTAAAGCTTATATATGACAGAGGCCTCATAGGGTCTATCCATGACTGgtattaaaac ... cttttaacagGTGTGAAGCATATTCAACATACCCCCGGACTTATGATTTACTCCATGCATG