Sequence
atgc intronic sequence ATGC exonic sequenceGTGGTCTCTAGGAGCTATAATGTATGAAATGCTTGTGGGGTATCCTCCCTTTTATTCAGACGAACCAATGTTGACTTGTAGAAAGgtaacatgtggaccccctgttaatggattcctgtccaatgcatcatgcatttgtatgagttgaaattacagtgtaggacttagagtccattgaattctgc...
Basic information
species | Glycine max |
transcript | GLYMA10G00830.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G00830.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G14350.3 (Arabidopsis thaliana), 5'ss of exon 8
GTGGTCTCTAGGAGCTATAATGTATGAAATGCTTGTGGGGTATCCTCCCTTTTATTCAGACGAACCAATGTTGACTTGTAGAAAGgtaacatgtggaccccctgttaatggattcctgtccaatgcatcatgcatttgtatgagttgaaattacagtgtaggacttagagtccattgaattctgc----------------------------------------------------------
||||||||| || || || |||||||||||||||||||||| ||| |||||||||||||| || |||||| |||||||| ||||||| | | || | || | || | | ||| | ||| || || || | | | |||| | | | |||
GTGGTCTCTTGGCGCCATTATGTATGAAATGCTTGTGGGGTTTCCGCCCTTTTATTCAGATGACCCAATGACAACTTGTAGGAAGgtaattaatccattcctttttga-atctttcattttaatattgaaggcagactggcgatttcaagtcttacatttaattttagtctttttgtatctctttggtaattctaatgtggaaacttacctcttctcgattcattatcttcccccttatgcag
upper sequence: GLYMA10G00830.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G23310.1 (Arabidopsis thaliana), 5'ss of exon 8
GTGGTCTCTAGGAGCTATAATGTATGAAATGCTTGTGGGGTATCCTCCCTTTTATTCAGACGAACCAATGTTGACTTGTAGAAAGgtaaca-tgtggaccccctgttaa-tggattcctgtccaatgcatcatgcatttgtatgagttgaaattacagtgtaggacttagagtcc-attgaattctgc-------------------------------------------------
|||||| || || || || |||||||||||||||||||||| ||| || |||||||||||||| |||||| ||||||||||||||| || | || ||| | | | |||| | | | || | | | | || ||| | | ||| ||| | | | ||| ||
GTGGTCACTTGGTGCGATCATGTATGAAATGCTTGTGGGGTTTCCACCATTTTATTCAGACGAGCCAATGACAACTTGTAGAAAGgtaccaatcctcactttttgtggactttaactctgttctagacttctagtaatctcaaatttttgcatt-cgatttagttcttgatcttctaatgatacctctttggtaatatatgcacatctctgaatacttgttattgtttttaatgcag
upper sequence: GLYMA10G00830.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv05s0049g01220.t01 (Vitis vinifera), 5'ss of exon 7
GTGGTCTCTAGGAGCTATAATGTATGAAATGCTTGTGGGGTATCCTCCCTTTTATTCAGACGAACCAATGTTGACTTGTAGAAAGgtaacatgtggaccccctgttaatggattcctgtccaatgcatcatgcatttgtatgagttgaaattacagtgtaggac-ttagagtccattgaattctgc
||||||||| || ||||| ||||| |||||||||||||| ||||| || ||||||||||| ||||| ||| |||||||| |||||| |||| | | | | | || | ||| | | | | ||| | |||| | | ||| | || ||
GTGGTCTCTTGGTGCTATCATGTACGAAATGCTTGTGGGATATCCACCTTTTTATTCAGATGAACCTATGACAACTTGTAGGAAGgtagttcttggaatgctgatcttgaaagatgttgtctgtgtaa-atgtttctacaattgcaccaatgagtttgtaaaatgcttatctccttcacatgctaa
upper sequence: GLYMA10G00830.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ28086 (Selaginella moellendorffii), 5'ss of exon 7
GTGGTCTCTAGGAGCTATAATGTATGAAATGCTTGTGGGGTATCCTCCCTTTTATTCAGACGAACCAATGTTGACTTGTAGAAAGgta-------acatgtggaccccctgttaatggatt---------cctgtccaatgcatcatgcatttgtatgagttgaaattacagtgt-aggacttagagtccattgaattctgc-------------------
||||||||| |||||||||||||| || ||||| || |||||||| ||||| ||||| |||||||| |||| ||||| | |||||| |||| | || || || ||| ||| | || | || | | |||||| | | || | | | ||| | | ||| ||| | || |
GTGGTCTCTTGGAGCTATAATGTACGAGATGCTAGTCGGGTATCCGCCCTTCTATTCCGACGAACCGATGTCTACTTGCCGGAAGgtacgccatcacatcttgattgactattcatgaattttgtactcgcttgcctcata-actacgcatttttgtatttttatgtgtgattgttattgatcagatagcatcgcgttaagatgtcttgtttcattgacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254348922|gb|GR852601.1|GR852601EST: TGGGGTATCCTCCCTTTTATTCAGACGAACCAATGTTGACTTGTAGAAAG ATAGTAAACTGGAGAACTACTTTAAAGTTTCCAGAAGAAGCTAAACTTTCA
genomic: TGGGGTATCCTCCCTTTTATTCAGACGAACCAATGTTGACTTGTAGAAAGgtaacatgtg ... caatacgcagATAGTAAACTGGAGAACTACTTTAAAGTTTCCAGAAGAAGCTAAACTTTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGTCTCTAGGAGCTATAATGTATGAAATGCTTGTGGGGTATCCTCCCTTTTATTCAGACGAACCAATGTTGACTTGTAGAAAGgtaacatgtggaccccctgttaatggattcctgtccaatgcatcatgcatttgtatgagttgaaattacagtgtaggacttagagtccattgaattctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaccccc