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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAATGCACATTCAATCTAGAATTAATTGGAGTGAAGAAAAACCCCAATGGCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttatgctgtttcctcttctaaattctaattgatggttatttccacactcacaattgaaggcatttgagttgatcctaacttgccctctctatttgctgatatgcactgatgtataatgtagctgtaatattatcaaaatgtgttgcttatttctttgcatactgcaatttcag

Basic information

species Glycine max
transcript GLYMA10G00490.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G00490.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os07g47580.1 (Oryza sativa), 5'ss of exon 7
TAAATGCACATTCAATCTAGAATTAATTGGAGTGAAGAAAAACCCCAATGGCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttatgctgtttcctcttctaaattctaattgatggttatttccacactcacaattgaaggcatttgagttgatcctaacttgccctctctatttgctgatatgcactgatgtataatgtagctgtaatattatcaaaatgtgttgcttatttctttgcatactgcaatttcag
 ||||| || ||||| || ||  |||||   |||||||||||||| ||||| |  |||||| |  ||||||||||  | || ||||||||||| |||||||||| |       |||  | | || ||   ||   |  || || ||   | | | | |||   | |||  || ||||  | | ||           ||| | ||    |||   |                                                              
GAAATGTACTTTCAACCTTGACATAATTTCTGTGAAGAAAAACCCAAATGGTCAAATGTACTCTACTCTTGGTGTTTTGACAAGGGGAACTATCATTGAGgtatgt-caagaattctgcctgtatatgaaaacaaa-agtaatctc---attta-agttgttagtattacagctgatagtgaatta----------ttgataatgaaaactttagc-------------------------------------------------------------

upper sequence: GLYMA10G00490.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G009876_T01 (Zea mays), 5'ss of exon 7
TAAATGCACATTCAATCTAGAATTAATTGGAGTGAAGAAAAACCCCAATGGCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttatgctgtttcctcttctaaattctaattgatggttatttccacactcacaattgaaggcatttgagttg-atcctaacttgccctctctatttgctgatatgcactgatgtataatg-tagctgtaatattatcaaaatgtgttgcttatttctttgcatactgcaatttcag
 || ||||| ||||| || ||  |||||   |||||||||||||| ||||| || |||||||| ||||||||||| || || |||||||| || ||||||||||        |||  |   |   ||| ||  |  |     | |  |  || || | | |    ||| |  ||   || |   || |      ||| |  |  ||  |   ||    |  || |  |  |  | || |   |                                    
GAAGTGCACTTTCAACCTTGACATAATTTCTGTGAAGAAAAACCCAAATGGTCCAATGTACACTTCTCTTGGTGTTATGACAAGGGGAACGATCATTGAGgtatgccaagcatttttttacc---attttatgtagtaccc-tgtgta-gctgactagtaactatattagtttttcgtcatggtttactgggattatctctttgtacccctcgaaaattgctgcttacaatggtcttctttcag-----------------------------------

upper sequence: GLYMA10G00490.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G174204_T01 (Zea mays), 5'ss of exon 7
TAAATGCACATTCAATCTAGAATTAATTGGAGTGAAGAAAAACCCCAATGGCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttatgctgtttcctcttctaaattctaattgatggttatttccacactcacaattgaaggcatttgagttgatcc--taacttgccctctctatttgctgatatgcactgatgtataatgtagctgtaatattatcaaaatgtgttgcttatttctttgcatactgcaatttcag
 || ||||| ||||| || ||  |||||   |||||||||||||| ||||| || |||||||| ||||||||||| || || |||||||| || ||||||||| |       |||   |   | | || || |  ||  ||  ||    | | ||  |   |||   | |   || | |  | |  |  ||||| ||| |       | | ||    | ||  | |  ||     | |  | | | |  |                             
GAAGTGCACTTTCAACCTTGACATAATTTCTGTGAAGAAAAACCCAAATGGTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAGgtactccaagcatttttaccagtta-ttgtagtcaatactt--ttgtgtagtgactgtattaggtgctagccatggttcactgagattacctctttatatcaccccctcccctcccctctatcgaaattgctgc-tcacaatagtattctttcag------------------------

upper sequence: GLYMA10G00490.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ37687 (Selaginella moellendorffii), 5'ss of exon 7
TAAATGCACATTCAATCTAGAATTAATTGGAGTGAAGAAAAACCCCAATGGCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgta--tttatgctgtttcctcttctaaattctaattgatggttatttccacactcacaattgaaggcatttgagttgatcctaacttgccctctctatttgctgatatgcactgatgtataatgtagctgtaatattatcaaaatgtgttgcttatttctttgcatactgcaatttcag
 || || |||||| | || ||| |  |||| |||||||||||||| || ||||| |||||||| || || ||||| || || |||||||| || || ||||||  || |||  ||||| | | |||| || |  || ||  ||          || ||                                                                                                                         
CAAGTGTACATTCCAGCTTGAAATCCTTGGCGTGAAGAAAAACCCGAACGGCCCCATGTACACGTCCCTGGGTGTGATAACTAGGGGAACGATCATCGAGgtaagttgatgg-gtttcgtttcctaagtttt--tttatcattcgaaatgttttc-cag------------------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA10G00490.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ15002 (Selaginella moellendorffii), 5'ss of exon 7
TAAATGCACATTCAATCTAGAATTAATTGGAGTGAAGAAAAACCCCAATGGCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgta--tttatgctgtttcctcttctaaattctaattgatggttatttccacactcacaattgaaggcatttgagttgatcctaacttgccctctctatttgctgatatgcactgatgtataatgtagctgtaatattatcaaaatgtgttgcttatttctttgcatactgcaatttcag
 || || |||||| | || ||| |  |||| |||||||||||||| || ||||| |||||||| || || ||||| || || |||||||| || || ||||||  || |||  ||||  | | ||||  | |  || ||     |    |   |  | |                                                                                                                        
CAAGTGTACATTCCAGCTTGAAATCCTTGGTGTGAAGAAAAACCCGAACGGCCCCATGTACACGTCCCTGGGTGTGATAACTAGGGGAACGATCATCGAGgtaagttgatgg-gttttgtttcctaagcttt--tttatatcattcgaaatgttttccag-----------------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192333081|gb|FK026410.1|FK026410
EST:     GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttatgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|17963424|gb|BM270173.1|BM270173
EST:     GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttatgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|17400258|gb|BM177032.1|BM177032
EST:     GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttatgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|26043857|gb|CA782197.1|CA782197
EST:     GCCCTATGTACACCTCTCTTGGTGTCTTTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttatgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|31459134|gb|CD401162.1|CD401162
EST:     GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttatgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|209725840|gb|BW654703.1|BW654703
EST:     GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGT-GTGTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttatgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|120530814|gb|EH258947.1|EH258947
EST:     GCC-TATGTACACCTCTCTTGGTGTCATTACCAGG--A-CTATA-T-GAG                         GTGA-TGTCA-TGAACT-GGTCTTGTC-CACC
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttatgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACC
EST: gi|22932705|gb|BU549844.1|BU549844
EST:     GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttatgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|192329668|gb|FK022934.1|FK022934
EST:     GTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GTGTCATTACCAGGGGAACTATAATTGAGgtatttatgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|209725841|gb|BW654704.1|BW654704
EST:     GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttatgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG