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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCCTGGCCGTCCAAATGACCGAAAGACACTTCTGGGTGAATTGAATTGGATCTTTACAGCCGTAACTGATACGATTGCCTGGAATGTTCTTCCTCATGgtaggtctcaaccctccccatccttctgccgacttactaaattaacatggtttttttttccatctccagtgatttagcatgcatttttggtatcttacattgatcattattttgttctgcactctgcag

Basic information

species Glycine max
transcript GLYMA09G41510.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 7
ATCCCTGGCCGTCCAAATGACCGAAAGACACTTCTGGGTGAATTGAATTGGATCTTTACAGCCGTAACTGATACGATTGCCTGGAATGTTCTTCCTCATGgta-ggtctcaaccctccccatccttctgccgacttactaaattaacatggtttttttttccatctccagtgatttagcatgcatttttggtatcttacattgatcattattttgttctgcactctgcag
|| |||||  | | ||||||||| || || ||||| || ||  | |||||||| ||||| ||  |||| ||||| ||||| |||||||||||||||||||||| ||  ||  |  |    | | || ||  ||   |  ||| ||       || ||     ||    | | | |        ||||| ||| | | | |    |  | | | ||               
ATTCCTGGAAGGCAAAATGACCGTAAAACTCTTCTTGGGGAGCTCAATTGGATTTTTACTGCTATAACAGATACAATTGCATGGAATGTTCTTCCTCATGgtatggcgtctgcgatgtata-ctttttggggatcaagaaaactagagaaaattattcaa--attcaaaataaatgtcagcttattttgggtttatgatacaagtt-tcactgtgcag------------

upper sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G08850.1 (Arabidopsis thaliana), 5'ss of exon 7
ATCCCTGGCCGTCCAAATGACCGAAAGACACTTCTGGGTGAATTGAATTGGATCTTTACAGCCGTAACTGATACGATTGCCTGGAATGTTCTTCCTCATGgtaggtctcaaccctccccatccttctgccgacttactaaattaacatggtttttttttccatctccagtgatttagcatgcatttttggtatcttacattgatcattattttgttctgcactctgcag
|| || ||||| | ||| || || |||||| |  | || || ||||| ||||| || ||||| || || ||||| ||||| |||||||| |||||||||||||        |    || | | ||||||        ||| ||| || || |         |||| |    | ||  | |   ||||  || || | |||  || ||  ||||   |||||        
ATTCCAGGCCGGCAAAACGATCGTAAGACATTGTTAGGGGAGTTGAACTGGATTTTCACAGCAGTGACGGATACAATTGCTTGGAATGTGCTTCCTCATGgta--------cttctccaaactttctgca-------taatttatcaagggtaa-------atcttcttcaagttgacttc--ttttctgtgtcct-catgaatgatagttttaccctgcag-------

upper sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 7
ATCCCTGGCCGTCCAAATGACCGAAAGACACTTCTGGGTGAATTGAATTGGATCTTTACAGCCGTAACTGATACGATTGCCTGGAATGTTCTTCCTCATGgtaggtctcaaccctccccatccttctgccgacttactaaattaacatggtttttttttccatctccagtgatttagcatgcatttttggtatcttacattgatcattattttgttctgcactctgcag
|| |||||||| | ||||||||| || |||||| |||| ||| |||| |||||||||||||| || ||||| || ||||| |||||||||||||| |||||||  |       ||  |     || ||| | | |    ||| | |   |||   ||||  || |    | |||         |  ||    |  || ||  ||  ||||||||| |||||        
ATTCCTGGCCGCCAAAATGACCGCAAAACACTTTTGGGAGAACTGAACTGGATCTTTACAGCAGTGACTGACACCATTGCTTGGAATGTTCTTCCCCATGgtaatttaattggcttactgattttatgcag-catgagcaatcagct--gttaaatttttaatttgtttttattc--------tccttacggtggtatatgcatatttattttgtgctgcag-------