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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGGTAGCAGTAGGACTGCTTCAATTGGCACCCAAGACAGTTACTCCTCGCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgctagtataattgtagtttaattccgttgtgcttctattttcctatcctatcctaaaaccttgtatccatgtctcatctgtgtgcataaacaca...

Basic information

species Glycine max
transcript GLYMA09G40060.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G40060.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv15s0048g01890.t01 (Vitis vinifera), 5'ss of exon 7
TGTGGTAGCAGTAGGACTGCTTCAATTGGCACCCAAGACAGTTACTCCTCGCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgctagtataattgtagtt-taattccgttgtgcttctatt-ttcctatcctatcctaaaaccttgtatcca-tgtctcatctgtgtgcataaacaca
 ||||| || || || ||||||||||||||||| |||| |||||||||||| || || ||||  ||||||||||||   || || || |||||||||||||| | ||| |||   ||   | |  |  ||   |  | |  |  ||  |   || ||        |     ||  || ||| | |  | ||   || |  |  
AGTGGTTGCTGTTGGGCTGCTTCAATTGGCACCAAAGAAAGTTACTCCTCGTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgccagtcctatgccactaatctttatataataccccctttactttcattctgattaggtattgcatagtcagtgtattaaatatg-atatcagta--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17153643|gb|BM143576.1|BM143576
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|254336246|gb|GR842425.1|GR842425
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|58015330|gb|CX702072.1|CX702072
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|254343225|gb|GR856929.1|GR856929
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|213588887|gb|DB984386.1|DB984386
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|254324273|gb|GR840590.1|GR840590
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGA-TAG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|7691912|gb|AW760029.1|AW760029
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|192323627|gb|FK019038.1|FK019038
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         T-GCTTCCTGCCCCGGTCA
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCA
EST: gi|254343224|gb|GR856928.1|GR856928
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGA
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGA
EST: gi|151394416|gb|EV264287.1|EV264287
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|214005573|gb|DB984581.1|DB984581
EST:     TGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTTGAAGAATAG
genomic: TGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|120492016|gb|EH220183.1|EH220183
EST:     CGTAACTGGGGCTTTTGGGATT-GTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCCTGCCC
genomic: CGTAACTGGGGCTTTTGG-ATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCC-TGCCC
EST: gi|254324274|gb|GR840591.1|GR840591
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|13312196|gb|BG405856.1|BG405856
EST:     GCGTAACTGGNGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTG
EST: gi|58015584|gb|CX702326.1|CX702326
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|254330639|gb|GR841904.1|GR841904
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|13480395|gb|BG509738.1|BG509738
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|19269910|gb|BM886166.1|BM886166
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGTAAGAATAG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|254336245|gb|GR842424.1|GR842424
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTA-TATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTG
EST: gi|19347174|gb|BM892054.1|BM892054
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|11412943|gb|BF424954.1|BF424954
EST:     GTAACTTGGGGCCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTGCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
genomic: GTAAC-TGGGG-CTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|22927124|gb|BU544263.1|BU544263
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|23732138|gb|BU764224.1|BU764224
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|48575471|gb|CO036420.1|CO036420
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|6724567|gb|AW308966.1|AW308966
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|23730911|gb|BU763562.1|BU763562
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|193622457|gb|FK570533.1|FK570533
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGG
EST: gi|6071462|gb|AW100849.1|AW100849
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|192316781|gb|FK006484.1|FK006484
EST:     GCGTAACAGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|6666969|gb|AW278428.1|AW278428
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|15199285|gb|BI423754.1|BI423754
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|6963494|gb|AW432187.1|AW432187
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTAGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
EST: gi|7691181|gb|AW759313.1|AW759313
EST:     GCGTAACTGGNGCTNNTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTGCTGCCCCCGTCAAGTCC
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCC
EST: gi|22932789|gb|BU549928.1|BU549928
EST:     GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAG                         TTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG
genomic: GCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGgtacctgcta ... tgcaatgcagTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAG