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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAACGAGGAAGAAGCCTCCCTCTTTGACATCCTCTGGTTATTACTTGCAAGTGTTATATTTGTGCCAATATTTCAAAAAATCCCTGGAGgtaactcgtttgctatgttttcttagtgtggaatttaacatagtctgtcaagtataacaaagttgtgtaggactctaaatgatttagttagaatgtgatt...

Basic information

species Glycine max
transcript GLYMA09G39770.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39770.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G058948_T01 (Zea mays), 5'ss of exon 3
GTGAACGAGGAAGAAGCCTCCCTCTTTGACATCCTCTGGTTATTACTTGCAAGTGTTATATTTGTGCCAATATTTCAAAAAATCCCTGGAGgtaactcgtttgctatgttttcttagtgtggaatttaacatagtctgtcaagtataacaaagttgtgtaggactctaaatgatttagttagaatgtgatt------
|| || ||||||||||| || || || ||||| || |  ||  | ||||| |||||||| ||||| ||| ||||||| ||||||||||||||| |      | |||  | || || |||          ||||||    ||        |   || || |  | | |      |  ||  ||  ||  |||      
GTAAATGAGGAAGAAGCTTCACTTTTCGACATACTGTATTTGCTTCTTGCCAGTGTTATTTTTGTACCATTATTTCAGAAAATCCCTGGAGgtgagatacattcta-atattgtttgtgca-----cggcatagttcagcagcatctgtagttttttgcattattttggtcactcaagcaagtttgcaattgaacta

upper sequence: GLYMA09G39770.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G093643_T01 (Zea mays), 5'ss of exon 4
GTGAACGAGGAAGAAGCCTCCCTCTTTGACATCCTCTGGTTATTACTTGCAAGTGTTATATTTGTGCCAATATTTCAAAAAATCCCTGGAGgtaactcgtttgctatgttttcttagtgtggaatttaacatagtctgtcaagtataacaaagttgtgtaggactctaaatgatttagttagaatgtgatt----
|| || ||||||||||| || || || ||||| || |  ||  | || || |||||||| ||||| ||| ||||||| ||||||||||||||| |    | |  | |  | |  |  |||| |       || ||    ||     |  |   || || |  | |     |     ||  ||  ||  |||    
GTAAATGAGGAAGAAGCTTCACTTTTCGACATACTATACTTGCTTCTGGCCAGTGTTATTTTTGTACCATTATTTCAGAAAATCCCTGGAGgtgagatatatattctaatattatt-tgtgca---cggaatggttcagcagaatcagtagttttttgcattatttcggttacccaaggaagtttgcaattgaac

upper sequence: GLYMA09G39770.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G01790.1 (Arabidopsis thaliana), 5'ss of exon 4
GTGAACGAGGAAGAAGCCTCCCTCTTTGACATCCTCTGGTTATTACTTGCAAGTGTTATATTTGTGCCAATATTTCAAAAAATCCCTGGAGgtaactcgtttgctatgttttcttagtgtggaatttaac-atagt-ctgtcaagtataacaaagttgtgtaggactctaaatgatttagttagaatgtgatt---------------------------------------------------------------------------------------
|| || ||||||||||| |||||||||||| |  | |||||| | || ||||| || |||||||||||  ||||||| ||||| ||||||||||| | || |  | | || |  |  |||  | | || | || |   |   |  | |  |    ||   |   ||||  |    ||   |       | | |                                                                                       
GTCAATGAGGAAGAAGCTTCCCTCTTTGACTTTTTGTGGTTACTGCTAGCAAGCGTCATATTTGTGCCTCTATTTCAGAAAATTCCTGGAGgtaagtagtatttttttttcttcttttgttaattctatccattgcattactatttgtttcccctttccctcaaactcctacaatttctatgttctcatcagtcaaaaacattttcagttctggtctcgcaatcatgttgcatagagatttatgtgccatcttgatggcttcatctgctgcaatgtatag

upper sequence: GLYMA09G39770.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 2
GTGAACGAGGAAGAAGCCTCCCTCTTTGACATCCTCTGGTTATTACTTGCAAGTGTTATATTTGTGCCAATATTTCAAAAAATCCCTGGAGgtaactcgtttgctatgttttcttagtgtggaatttaacatagtctgtcaagtataacaaagttgtgtaggactctaaatgatttagttagaatgtgatt----
 |||| ||||||||||| ||||| ||||||||  | |||||| | || |||||||||||||||||||| ||||| || ||||| |||||||||||||   ||  | |  ||  | |      | | | |  | |  | | |  ||| |     ||   |  ||    | |  ||    |||| || ||  |    
ATGAATGAGGAAGAAGCTTCCCTTTTTGACATGTTATGGTTACTGCTAGCAAGTGTTATATTTGTGCCTATATTCCAGAAAATTCCTGGAGgtaactgaattcttgtacttggtcatct--aactctgaactggattattat-tattattttttttaatgtgatatcatac-atacttttagcatttgggtattt