Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGCCGTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGgtatatacaatgtattaaagtgaagtgaatttcctatgttaaatgctcctgaatcatgagttgaggacctcacattttgtattaatactttcttagcatc...

Basic information

species Glycine max
transcript GLYMA09G38110.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38110.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 7
---ATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGCCGTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGgta--tatacaatgtattaaagtgaagtgaatttcctatgttaaatgctcctgaatcatgagttgaggacctcacattttgtattaatactttcttagcatc---
    || || ||||||||||| || ||||||||||||||||| || || || |||||||||||| | || ||  |  | || ||    |  || | |   ||||||   |  || |    | |  | |||  ||| |    | ||  |||  || |         ||  ||  | || || | |  | |  |||||  | | |     
CCTCTTTTCTGCTGCTGGTCTTCCTCATAATGAAATTGCTGCCCAAATTTGTCGTCAGGCTGGCCTTGTGAAAAGCTTGGAGAAA---GGCAAGCATGCAGAGgtagccaagcatttctctcacataaagataatctgac-tatttgatgacccagtg----agatttgggctcacatatatagcttaataactttagttgtacatgg

upper sequence: GLYMA09G38110.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 7
---ATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGCCGTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGgtatatacaatgtattaaagtgaagtgaatttcctatgttaaatgc--tcctgaatcatgagttgaggacctcacattttgtattaatactttcttagcatc
   ||| || |||||||| ||||| || |||||||||||||| ||||| || |||||||||||| | || |||  | | || ||    |  || | |   ||||||  ||   |||  |||    ||    |   |||    ||  | |   | |   |       |    ||     |      ||    ||| |   |  |  
CCTATTTTCTGCTGCTGGACTCCCTCACAATGAAATTGCTGCTCAGATCTGTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAA---GGAAAGCATGCAGAGgtagctaatgtgtcctaactgcaaccctaccccctcccctacctacaaacatatttttcagagtacaaacagttgaacacacatctgcactcttaaaaaa--

upper sequence: GLYMA09G38110.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 7
---ATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGCCGTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGgtatatacaatgtattaaagtgaagtgaatttcctatgttaaatgctcctgaatcatgagttgaggacctcacattt---tgtattaatactttctta-gcatc
    || || |||||||| ||||| || |||||||||||||| ||||| || |||||||||||  | || |||  | | || ||    |  || | |   ||||||  ||   |||  |||  |  |        ||||  |   |||| |      | | |    |  | |  |  |||   || |  || | ||    |  ||| 
ACTGTTTTCTGCTGCTGGGCTCCCTCACAATGAAATTGCTGCTCAGATTTGTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAA---GGAAAGCATGCTGAGgtagctaatgtgttctaacttctaactgcaaccctac-tggcatgccctcc--cccttatccaaaaaacatatttttcagtgcacaaacagttgaaaacacat-

upper sequence: GLYMA09G38110.2 (Glycine max), 5'ss of exon 7
lower sequence: AT4G38510.4 (Arabidopsis thaliana), 5'ss of exon 8
ATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGCCGTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGgtatatacaatgtattaaagtgaagtgaatttcctatgttaaatgctcctgaatcatgagt-tgaggacctcacattttgtattaatactttcttagcatc
 || || || || ||||| ||||| |||||||||||||| ||||| |||||||||||||| || || |||||  |||| ||||| |||||||||||||||||||  || || |||  |      ||   | ||    |||  |   |  |   | |  | | | |        | ||    | | | || | |  |  |  
CTTTTCTGCCGCAGGTCTTCCCCACAATGAAATTGCTGCTCAGATTTGCCGTCAGGCTGGTTTGGTTAAGCGTTTAGAGAAGTCAGATAATCTTCTCGAGgtat-cacgatttatacattactggtccgtgtctacagttggaaattggtttgttacaattataacagtgatcccttagacagttagacatacccattaca

upper sequence: GLYMA09G38110.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 7
ATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGCCGTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGgtatatacaatgtattaaagtgaagt---gaatttcctatg-ttaaatgctcctgaatcatgagttgaggacctcacattttgtattaatactttcttagcatc
 || || ||||||||||| || ||||||||||| ||||| |||||||| || ||||||||  | || ||| |  | || |||||||  | ||| || |||||||     |     |  |  ||| |   | ||||  ||   || |||        ||  ||| | |  ||      |      |  |  | | | |||     
TTTTTCTGCTGCTGGTCTTCCTCATAATGAAATAGCTGCTCAGATATGTCGGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAGgtatggtagactcgctgcacagaaatttggcatttaataaaattgaattgcaaaagatgttgattagtagaataactagggcaaagaaccattgttttat----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18734533|gb|BM528238.1|BM528238
EST:     GTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAG                         GGTGGAGGAGAAGAGGACAATTTTGCCATCGTGTTTGCAGCTATGGGAGTT
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGgtatatacaa ... caatatacagGGTGGAGGAGAAGAGGACAATTTTGCCATCGTGTTTGCAGCTATGGGAGTT
EST: gi|22931741|gb|BU548880.1|BU548880
EST:     GTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAG                         GGTGGAGGAGAAGAGGACAATTTTGCCATCGTGTTTGCAGCTATGGGAGTT
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGgtatatacaa ... caatatacagGGTGGAGGAGAAGAGGACAATTTTGCCATCGTGTTTGCAGCTATGGGAGTT
EST: gi|14259630|gb|BG882538.1|BG882538
EST:     GTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAG                         GGTGGAGGAGAAGAGGACAATTTTGCCATCGTGTTTGCAGCTATGGGAGTT
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGgtatatacaa ... caatatacagGGTGGAGGAGAAGAGGACAATTTTGCCATCGTGTTTGCAGCTATGGGAGTT
EST: gi|8285807|gb|BE023366.1|BE023366
EST:     GTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAG                         GGTGGAGGAGAAGAGGACAATTTTGCCATTGTGTTTGCAGCTATGGGAGTT
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGgtatatacaa ... caatatacagGGTGGAGGAGAAGAGGACAATTTTGCCATCGTGTTTGCAGCTATGGGAGTT
EST: gi|16279376|gb|BI943404.1|BI943404
EST:     GTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAG                         GGTGGAGGAGAAGAGGACAATTTTGCCATCGTGTTTGCAGCTATGGGAGTT
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGgtatatacaa ... caatatacagGGTGGAGGAGAAGAGGACAATTTTGCCATCGTGTTTGCAGCTATGGGAGTT
EST: gi|7589581|gb|AW705352.1|AW705352
EST:     GTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAG                         GGTGGAGGAGAAGAGGACAATTTTGCCATCGTGATTGCAGCTATGGGAGAT
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGgtatatacaa ... caatatacagGGTGGAGGAGAAGAGGACAATTTTGCCATCGTGTTTGCAGCTATGGGAGTT
EST: gi|5342420|gb|AI794704.1|AI794704
EST:     TCAGGCTGGCTTAGTCAAGCGACTACGAAA-GTCTGATCATCTTCTCGAG                         GGTGGACGAGAAGAGGAC
genomic: TCAGGCTGGCTTAGTCAAGCGACTA-GAAAAGTCTGATAATCTTCTCGAGgtatatacaa ... caatatacagGGTGGAGGAGAAGAGGAC
EST: gi|16283538|gb|BI945603.1|BI945603
EST:     GTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAG                         GGTGGAGGAGAAGAGGACAATTTTGCCATCGTGTTTGCAGCTATGGGAGTT
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGgtatatacaa ... caatatacagGGTGGAGGAGAAGAGGACAATTTTGCCATCGTGTTTGCAGCTATGGGAGTT