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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTACATATGGGGATCCAACAGTAAGGATGCCTCATATAAGCAGACCGGTGTTCAATTGGAAAATTACGCTGTATAATATCCgtaagatttcacctgtttcatctttactggaactggaaaaaaagcctttttcttcatcactaaatgtggataaattgtccttttaaacttgtttttgttc...

Basic information

species Glycine max
transcript GLYMA09G36070.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G36070.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0158g00120.t01 (Vitis vinifera), 5'ss of exon 7
ATTACATATGGGGATCCAACAGTAAGGATGCCTCATATAAGCAGACCGGTGTTCAATTGGAAAATTACGCTGTATAATATCCgtaagatttcacctgtttcatctttactggaactggaaaaaaagcctttttcttcatcactaaatgtggataaattgtcc---ttttaaacttgt--ttttgttc
|| || ||||| |||||||||||||||||||||||| |  |  |||| || | |||||||||| ||    | ||    || |||||| | |    | | ||| || ||  |  |             | | |   | |||| | | | |  | ||      |    |||||  ||||  |||  || 
ATAACCTATGGTGATCCAACAGTAAGGATGCCTCATTTGGGTCGACCAGTATACAATTGGAAAGTTGTATTATACGTCATTCgtaagttctt---tttctca-ctgtatggttatctccctcctcttcctctctctaatcatttagtttttagaagcaactcatgctttaatgttgtaatttcatt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|105634048|gb|DW247364.1|DW247364
EST:     TCATATAAGCAGACCGGTGTTCGATTGGAAAATTGCGCTGTATAATATCC                         CAAGACCAGGATTTCAAAAGCCCGAGAGTAGT
genomic: TCATATAAGCAGACCGGTGTTCAATTGGAAAATTACGCTGTATAATATCCgtaagatttc ... atccttgcagCAAGACCAGGATTTCAAAAGCCCGAGAGTAGT
EST: gi|192330142|gb|FK019782.1|FK019782
EST:     TCATATAAGCAGACCGGTGTTCAATTGGAAAATTACGCTGTATAATATCC                         CAAGACCAGGATTTCAAAAGCCCGAGAGTAGTACACCATCAAGAAAATCAT
genomic: TCATATAAGCAGACCGGTGTTCAATTGGAAAATTACGCTGTATAATATCCgtaagatttc ... atccttgcagCAAGACCAGGATTTCAAAAGCCCGAGAGTAGTACACCATCAAGAAAATCAT