1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTTCTGTTGGCAAGGAAGTGGTTGTCAATGGCGAGAATGGATATAAGGAAGGCAATGGCAAGCAGAGCTCTAGTCATGACGATTGTGATTTGCAAGAATGgtataaaacttgttctcatttagaatagctaaaagggcaccgtaatagtaaacaactttttgcagcaattcctttttcagtccttgccaaaaaaaattgtgcatttattcaggttttcccattttcccttaatttgtttgtcagcattttaagtggtttatgaataaatgcag
species | Glycine max |
transcript | GLYMA09G35980.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGCAATGGCAAGCAGAGCTCTAGTCATGACGATTGTGATTTGCAAGAATG TTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGEST: gi|15815311|gb|BI787586.1|BI787586
genomic: GGCAATGGCAAGCAGAGCTCTAGTCATGACGATTGTGATTTGCAAGAATGgtataaaact ... ataaatgcagTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAG
EST: GGCAATGGCAAGCAGAGCTCTAGTCATGACGATTGTGATTTGCAAGAATG TTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGGTGAEST: gi|193400838|gb|FK368759.1|FK368759
genomic: GGCAATGGCAAGCAGAGCTCTAGTCATGACGATTGTGATTTGCAAGAATGgtataaaact ... ataaatgcagTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGGTGA
EST: GGCAATGGCAAGCAGAGCTCTAGTCATGACGATTGTGATTTGCAAGAATG TTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGGTGAEST: gi|24206180|gb|BU965433.1|BU965433
genomic: GGCAATGGCAAGCAGAGCTCTAGTCATGACGATTGTGATTTGCAAGAATGgtataaaact ... ataaatgcagTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGGTGA
EST: GGCAATGGCAAGCAGAGCTCTAGTCATGACGATTGTGATTTGCAAGAATG TTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGGTGAEST: gi|10237801|gb|BE806689.1|BE806689
genomic: GGCAATGGCAAGCAGAGCTCTAGTCATGACGATTGTGATTTGCAAGAATGgtataaaact ... ataaatgcagTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGGTGA
EST: GGCAATGGCAAGCAGAACTCTAGTCATGACGATTGTGATTTGCAAGAATG TTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGGTGAEST: gi|208314144|gb|GE117736.1|GE117736
genomic: GGCAATGGCAAGCAGAGCTCTAGTCATGACGATTGTGATTTGCAAGAATGgtataaaact ... ataaatgcagTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGGTGA
EST: GGCAATGGCAAGCAGAGCTCTAGTCATGACGATTGTGATTTGCAAGAATG TTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGGTGAEST: gi|193692442|gb|FK627617.1|FK627617
genomic: GGCAATGGCAAGCAGAGCTCTAGTCATGACGATTGTGATTTGCAAGAATGgtataaaact ... ataaatgcagTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGGTGA
EST: GGCAATGGCAAGTAGAGCTCTAGTCATGACGATTGTGATTTGCAAGAATG TTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAEST: gi|14991995|gb|BI317668.1|BI317668
genomic: GGCAATGGCAAGCAGAGCTCTAGTCATGACGATTGTGATTTGCAAGAATGgtataaaact ... ataaatgcagTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAA
EST: GGCAATGGCAAGCATAGCTCTAGTCATGACGATTGTGATTTGCAAGAATG TTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGGTGAEST: gi|193619469|gb|FK571337.1|FK571337
genomic: GGCAATGGCAAGCAGAGCTCTAGTCATGACGATTGTGATTTGCAAGAATGgtataaaact ... ataaatgcagTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGGTGA
EST: GGCAATGGCAAGCAGAGCTCTAGTCATGACGATTGTGATTCGCAAGAATG TTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAEST: gi|207798278|gb|GD771600.1|GD771600
genomic: GGCAATGGCAAGCAGAGCTCTAGTCATGACGATTGTGATTTGCAAGAATGgtataaaact ... ataaatgcagTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACA
EST: GGCAATGGCAAGCAGAGCTCTAGTCATGACGATTGTGATTTGCAAGAATG TTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAAACAAAAG
genomic: GGCAATGGCAAGCAGAGCTCTAGTCATGACGATTGTGATTTGCAAGAATGgtataaaact ... ataaatgcagTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAA-CAAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCTGTTGGCAAGGAAGTGGTTGTCAATGGCGAGAATGGATATAAGGAAGGCAATGGCAAGCAGAGCTCTAGTCATGACGATTGTGATTTGCAAGAATGgtataaaacttgttctcatttagaatagctaaaagggcaccgtaatagtaaacaactttttgcagcaattcctttttcagtccttgccaaaaaaaattgtgcatttattcaggttttcccattttcccttaatttgtttgtcagcattttaagtggtttatgaataaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA