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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGGAATATGGAACAGTAGATGGAAAGTATTCTGCTTCCTATATCAGTGGGAAGTTATGTGACATTGCAGAGGCATATTCCAATGATGAAAATGTTAAGgtatttattggaagccaacacttcccttataaggaaagggggaaaagttaaaatgcataatttaggaatactttgattgcttttaatattgacatcagta...

Basic information

species Glycine max
transcript GLYMA09G35240.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G35240.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G146697_T03 (Zea mays), 5'ss of exon 8
GGGGGAATATGGAACAGTAGATGGAAAGTATTCTGCTTCCTATATCAGTGGGAAGTTATGTGACATTGCAGAGGCATATTCCAATGATGAAAATGTTAAGgtatttattggaagccaacact-tcccttataaggaaagggggaaaagttaaaatgcataatttaggaatactttgattgcttttaatat-tgacatcagta-
||||||||||||||||| ||||||||| ||||| ||||| ||||| | ||||||||| |||||  | ||||||||  |   || |||||| | ||| |||||||  |||   |      | | |  || ||     |  ||  |    ||    ||      |||  |      || |   |  | | || |||||  ||   
GGGGGAATATGGAACAGCAGATGGAAAATATTCAGCTTCTTATATTATTGGGAAGTTGTGTGATGTGGCAGAGGCCCACCTCACTGATGACACTGTCAAGgtatgcattttgactttgtagtgtagctcatgtttcattggtcat---ttgccttggcctccttataaccttcatgctatatgctgaaatatgacaataggtt

upper sequence: GLYMA09G35240.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G031352_T01 (Zea mays), 5'ss of exon 7
GGGGGAATATGGAACAGTAGATGGAAAGTATTCTGCTTCCTATATCAGTGGGAAGTTATGTGACATTGCAGAGGCATATTCCAATGATGAAAATGTTAAGgtat-ttattggaagccaacacttcccttataaggaaagggggaaaagttaaaa--tgcataattta----ggaatactttgattgcttttaatattgacatcagta
||||||||||||||||| |||||||||  |||| ||||| ||||| | |||||| || |||||  | ||||||||  |   || |||||| | ||| ||||||| || ||| |    | | | |   | ||     |    ||     ||| ||  |||||  | ||    | |||||  | || | || || |   |         
GGGGGAATATGGAACAGCAGATGGAAAACATTCGGCTTCTTATATTATTGGGAAATTGTGTGATGTGGCAGAGGCCCACCTCACTGATGACACTGTCAAGgtatgtttttgtagtgtagcccatgtttcattgaccaccttggcctccttataacttgcatgctctatgctgaaatacggtaataggttctagttaagct-------

upper sequence: GLYMA09G35240.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv02s0087g00690.t01 (Vitis vinifera), 5'ss of exon 8
GGGGGAATATGGAACAGTAGATGGAAAGTATTCTGCTTCCTATATCAGTGGGAAGTTATGTGACATTGCAGAGGCATATTCCAATGATGAAAATGTTAAGgtatttattggaagccaacacttccct-tataaggaaagggggaaaagttaaaatgcataatttaggaatactttgattgcttttaatattgacatcagta
||| || |||||||| |  | |||||||||||||||||||||||||| ||| |||||||||||  | ||||||||  |||| |   |||| | ||||||||||||  |  |     |  | ||   | | |           |  | |||   ||   | |   | |  || ||  || | |||   | ||    | | | 
GGGTGAGTATGGAACTGCGGGTGGAAAGTATTCTGCTTCCTATATCACTGGAAAGTTATGTGATGTGGCAGAGGCCCATTCAAGCAATGACACTGTTAAGgtattcctcagcctttatgagttttgtgtttgcattggttttgtcaggtttttattggtcaaccaagtttagttatat-ggtttggtttttctagttactg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23734961|gb|BU765740.1|BU765740
EST:     GTGACATTGCAGAGGCATATTCCAATGATGAAAATGTTAAG                         GCTAATGCAATTTCAGCATTGATGAAAATTTATGCATTTGAAGTAGCAGCC
genomic: GTGACATTGCAGAGGCATATTCCAATGATGAAAATGTTAAGgtatttattg ... ttttgtgaagGCTAATGCAATTTCAGCATTGATGAAAATTTATGCATTTGAAGTAGCAGCC
EST: gi|254346448|gb|GR856170.1|GR856170
EST:     GGAAGTTATGTGACATTGCAGAGGCATATTCCAATGATGAAAATGTTAAG                         GCTAATGCAATTTCAGCATTGATGAAAATTTATGCATTTGAAGTAGCAGCC
genomic: GGAAGTTATGTGACATTGCAGAGGCATATTCCAATGATGAAAATGTTAAGgtatttattg ... ttttgtgaagGCTAATGCAATTTCAGCATTGATGAAAATTTATGCATTTGAAGTAGCAGCC