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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGATTAACATCAGTACTGCATTGTGATCGATTTCGAGCTCTATTACCTAGGGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGGgtaagttcctttaatatgattttttacttagccttttcctaaaatttagagttccttagctcattttatgattcaatatgctactgttaacag

Basic information

species Glycine max
transcript GLYMA09G35050.4
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10709683|gb|BF009407.1|BF009407
EST:     GTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGG                         AAAGGATGTCTTGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGT
genomic: GTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGGgtaagttcct ... ctgttaacagAAAGGATGTCTTGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGT
EST: gi|9898765|gb|BE607733.1|BE607733
EST:     AGGGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGG                         AAAGGATGTCTTGNGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGT
genomic: AGGGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGGgtaagttcct ... ctgttaacagAAAGGATGTCTTGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGT
EST: gi|37995321|gb|CF806910.1|CF806910
EST:     AGGGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGG                         AAAGGATGTCTTGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGT
genomic: AGGGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGGgtaagttcct ... ctgttaacagAAAGGATGTCTTGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGT
EST: gi|9820186|gb|BE555696.1|BE555696
EST:     ANGGGAGCTAGAGTGAAATGCCTCTCAAATGCTGGTTACTTTATCAATGG                         AAAGGATGTCTTGGGAGAACAACACATTGAACAATACTTCAGTCAAGTTGT
genomic: AGGGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGGgtaagttcct ... ctgttaacagAAAGGATGTCTTGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGT
EST: gi|15287443|gb|BI471334.1|BI471334
EST:     AGGGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGG                         AAAGGATGTCTTGGGA
genomic: AGGGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGGgtaagttcct ... ctgttaacagAAAGGATGTCTTGGGA
EST: gi|7589608|gb|AW705379.1|AW705379
EST:     AGGGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGG                         AAAGGATGTCTTGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGT
genomic: AGGGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGGgtaagttcct ... ctgttaacagAAAGGATGTCTTGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGT
EST: gi|33389751|gb|CA852958.1|CA852958
EST:     AGGGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGG                         AAAGGATGTCTTGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGT
genomic: AGGGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGGgtaagttcct ... ctgttaacagAAAGGATGTCTTGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGATTAACATCAGTACTGCATTGTGATCGATTTCGAGCTCTATTACCTAGGGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGGgtaagttcctttaatatgattttttacttagccttttcctaaaatttagagttccttagctcattttatgattcaatatgctactgttaacag

- - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG