Sequence
atgc intronic sequence ATGC exonic sequenceGTTGTTGTAGGCTCAGAAGACTTAGCTGCCAATCATGATGTCATGCAGATAGTTGAGgtgtgaattttatcaaatctacatttctcatatatgtatttatgcttttagtgaatattaattccttttacattcatag
Basic information
species | Glycine max |
transcript | GLYMA09G34390.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G34390.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ23753 (Selaginella moellendorffii), 5'ss of exon 7
GTTGTTGTAGGCTCAGAAGACTTAGCTGCCAATCATGATGTCATGCAGATAGTTGAGgtgtgaattttatcaaatctacatttctcatatatgtatttatgcttttagtgaatattaattccttttacattcatag
|| |||||| |||||||| ||| ||||||||||||| |||| ||||||||||||||| | |||| | | | || || | | || || ||
ATTACTGTAGGATCAGAAGATTTATCTGCCAATCATGACGTCACGCAGATAGTTGAGgt--tagttttgttggctg-gctttagattgatgctcacaaagactgtttgtag-------------------------
upper sequence: GLYMA09G34390.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ21391 (Selaginella moellendorffii), 5'ss of exon 7
---------------------GTTGTTGTAGGCTCAGAAGACTTAGCTGCCAATCATGATGTCATGCAGATAGTTGAGgtgtgaattttatcaaatctacatttctcatatatgtatttatgcttttagtgaatattaattccttttacattcatag
|| |||||| |||||||| ||| |||| |||||||| |||| ||||||||||||||| | |||| | | | || || | | || || ||
GAGCTTATAAGTTTTCTCCAGATTACTGTAGGATCAGAAGATTTATCTGCTAATCATGACGTCACGCAGATAGTTGAGgt--tagttttgttggctg-gctttagattgatgctcacaaagactgtttgtag-------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207770338|gb|GD741448.1|GD741448EST: AGGCTCAGTAAGACTTAGCTGCCAATCATGATGTCATGCAGATAGTTGAG GTCTTGGATGACCGTTCTCGTGATAAGCGCCTAGTTGCTTTACTGGAAAAG
genomic: AGGCTCAG-AAGACTTAGCTGCCAATCATGATGTCATGCAGATAGTTGAGgtgtgaattt ... acattcatagGTCTTGGATGATCGTTCTCGTGATAAGCGCCTAGCTGCTTTACTGGAAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGTTGTAGGCTCAGAAGACTTAGCTGCCAATCATGATGTCATGCAGATAGTTGAGgtgtgaattttatcaaatctacatttctcatatatgtatttatgcttttagtgaatattaattccttttacattcatag
- - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - GCAGAT