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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGCCAATTTAACTGGCGTGTTGCATTTTGGGTTGAGGCAATTTTGATGCTTCCTTTTCCCATTTTGGGTTTTGTAATAAAGCCTTTGCAATTGAAAGgtgaccattttcttctgtttgatgtgttccagaatagccttaatttttttttaatccctgtcatagtaatgcactatttgacttttaatgtaggttttgc...

Basic information

species Glycine max
transcript GLYMA09G33680.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G33680.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os04g44430.1 (Oryza sativa), 5'ss of exon 6
GGAAGCCAATTTAACTGGCGTGTTGCATTTTGGGTTGAGGCAATTTTGATGCTTCCTTTTCCCATTTTGGGTTTTGTAATAAAGCCTTTGCAATTGAAAGgtgaccattttcttctgtttgatgtgttccagaatagccttaatttttttttaatccctgtcatagtaatgcactatttgacttttaatgtaggttttgc------------------------------------------
||||      |  ||||||||| ||| || ||||  ||| | ||||||||||||||||||   ||| |||| |||||||||||||| ||  |  | |||||||     ||| || ||| | | | |      ||   |     ||| | |   |  ||  | || || | |   | ||||  | |  ||   | ||||                                            
GGAAATAGTCTGCACTGGCGTGCTGCTTTCTGGGGAGAGTCGATTTTGATGCTTCCTTTTGTTATTCTGGGCTTTGTAATAAAGCCATTAGAGCTCAAAGgtg--tggtttattttgtgtcacgagagtataaagcactactgtttatatagcactccattaattgttacggtatctttggttct--atcatgattttattcccttctttttattctttttggcgggcgttttgtgcaacag

upper sequence: GLYMA09G33680.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0205g00120.t01 (Vitis vinifera), 5'ss of exon 7
GGAAGCCAATTTAACTGGCGTGTTGCATTTTGGGTTGAGGCAATTTTGATGCTTCCTTTTCCCATTTTGGGTTTTGTAATAAAGCCTTTGCAATTGAAAGgtgaccattttcttc-tgtttgatgtgttccagaatagccttaatttttttttaatccctgtcatagtaatgcactatttgacttttaatg--taggttttgc--
|||   || |||||||||||   |||||| |||| ||| ||||||||||||||||| ||| |  || |||||||||| || || |||||||| |||||||||     | || | | ||||  | ||       | |||   |    ||  | |  ||||  | ||  |  |  ||| |    | || ||||  | |   |  |  
GGAGAGCATTTTAACTGGCGATATGCATTCTGGGGTGAAGCAATTTTGATGCTTCCATTTGCTGTTCTGGGTTTTGTTATGAAACCTTTGCAGTTGAAAGgttggtttattatacatgttccacgttgctagaactagaagttcaattcctgtggtccc-ataatcatt-tttactttccatccttcaatgatttgtgatcacag