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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatccttttagttttaccatggtcctgatccttttgataataagacatgatatttgaatgttttcattttttttaaacaccctatcattatttt...

Basic information

species Glycine max
transcript GLYMA09G33480.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G33480.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0211g00100.t01 (Vitis vinifera), 5'ss of exon 7
ACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatccttttagttttaccatg-gtcctgatccttttgataataagaca--tgatatttgaatgttttcattttttttaaacaccctatcattatttt
||||||||||| ||  |||||||||| ||  |||||||||||||||||||||||||| |||| || | ||| ||  ||||||||||||| ||||| |  |  | ||||  || || || | || ||  |  ||       | ||  |  |  || ||   | ||   ||  | |||  ||||    |  |||    
ACTGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttccattttgcttatagcaggagttcttttagttccatccctgagcaaatttttacttagtttttactataatattttcacacaacttgtttaa---

upper sequence: GLYMA09G33480.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 7
ACTGACACCAATAAGGTATCTGCAGTCTCCTTATTTTTTGAGACAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatccttttagttttaccatg-gtcctgatccttttgataataagaca--tgatatttgaatgttttcattttttttaaacaccctatcattatttt
|| |||||||| ||  |||||||||| ||  |||||||||||||||||||||||||| |||| || | ||| ||  ||||||||||||| ||||| |  |  | ||||  || || || | || ||  |  ||       | ||  |  |  || ||   | ||   ||  | |||  ||||    |  |||    
ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttccattttgcttatagcaggagttcttttagttccatccctgagcaaatttttacttagtttttactataatattttcacacaacttgtttaa---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207755695|gb|GD728946.1|GD728946
EST:     CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAG                         TTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
genomic: CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatc ... tgaaatgcagTTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
EST: gi|193419865|gb|FK381933.1|FK381933
EST:     CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAG                         TTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
genomic: CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatc ... tgaaatgcagTTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
EST: gi|193554702|gb|FK515539.1|FK515539
EST:     CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAG                         TTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
genomic: CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatc ... tgaaatgcagTTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
EST: gi|193325818|gb|FK290257.1|FK290257
EST:     CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAG                         TTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
genomic: CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatc ... tgaaatgcagTTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
EST: gi|207738037|gb|GD715717.1|GD715717
EST:     ATAGACTGAACGAAAACACGGGACACATTGACTATGATCAG                         TTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
genomic: ATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatc ... tgaaatgcagTTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
EST: gi|193455615|gb|FK418780.1|FK418780
EST:     CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAG                         TTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
genomic: CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatc ... tgaaatgcagTTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
EST: gi|207707628|gb|GD689086.1|GD689086
EST:     CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAG                         TTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
genomic: CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatc ... tgaaatgcagTTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
EST: gi|207729780|gb|GD707816.1|GD707816
EST:     CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAG                         TTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
genomic: CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatc ... tgaaatgcagTTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
EST: gi|208174031|gb|GD967292.1|GD967292
EST:     CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAG                         TTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTA
genomic: CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatc ... tgaaatgcagTTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTA
EST: gi|208312145|gb|GE101765.1|GE101765
EST:     ATAGACTGAACGAAAACACGGGACACATTGACTATGATCAG                         TTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
genomic: ATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatc ... tgaaatgcagTTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
EST: gi|207773709|gb|GD745743.1|GD745743
EST:     CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAG                         TTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
genomic: CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatc ... tgaaatgcagTTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
EST: gi|208174760|gb|GD972109.1|GD972109
EST:     CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAG                         TTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
genomic: CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatc ... tgaaatgcagTTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
EST: gi|193425793|gb|FK386944.1|FK386944
EST:     CAATGCCATATAGACTGAACGAAAACAC-GGACACATTGACTATGATCAG                         TTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
genomic: CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatc ... tgaaatgcagTTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
EST: gi|208093400|gb|GD895239.1|GD895239
EST:     CAATGCCGTATAGACTGAACGAAAACACGGGACACATTGACTATGATCAG                         TTGGAGAGTACGGCGAAACTCTTCAGGCCAAAAATTAATAGTTAGACTGGA
genomic: CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatc ... tgaaatgcagTTGGAGAGTACGGCGAAACTCTTCAGGCCAAAA-TTAATAGTT-G-CTGGA
EST: gi|208160227|gb|GD953483.1|GD953483
EST:     CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAG                         TTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
genomic: CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatc ... tgaaatgcagTTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
EST: gi|193422500|gb|FK387593.1|FK387593
EST:     CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAG                         TTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGACTAGGAG
genomic: CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatc ... tgaaatgcagTTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTG-CT-GGAG
EST: gi|207785843|gb|GD755240.1|GD755240
EST:     CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAG                         TTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
genomic: CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatc ... tgaaatgcagTTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
EST: gi|207714334|gb|GD695855.1|GD695855
EST:     CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAG                         TTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
genomic: CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatc ... tgaaatgcagTTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
EST: gi|193543131|gb|FK503682.1|FK503682
EST:     CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAG                         TTGGAGAGTACGGCGAAA
genomic: CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatc ... tgaaatgcagTTGGAGAGTACGGCGAAA
EST: gi|193313395|gb|FK282024.1|FK282024
EST:     CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAG                         TTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
genomic: CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatc ... tgaaatgcagTTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
EST: gi|208038129|gb|GD837025.1|GD837025
EST:     CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAG                         TTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
genomic: CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatc ... tgaaatgcagTTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
EST: gi|193316056|gb|FK281422.1|FK281422
EST:     CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAG                         TTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
genomic: CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatc ... tgaaatgcagTTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
EST: gi|193443034|gb|FK407926.1|FK407926
EST:     CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAG                         TTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT
genomic: CAATGCCATATAGACTGAACGAAAACACGGGACACATTGACTATGATCAGgttatgtatc ... tgaaatgcagTTGGAGAGTACGGCGAAACTCTTCAGGCCAAAATTAATAGTTGCTGGAGCT