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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGTCCAAGGGATTCCTCTTGTTCAAGGCTCAGACAGATATTTTTGGTTTGGTCGGCCTCAATTAGTTCTTCATCTTATCCATTTTGCTTTGTTCCAGgtattcaatttgtttcctttaagccgaatcattaacaaatgtttagcagatggaacagacaacacatgtatatacagttctggtttagaattgaaaatgc...

Basic information

species Glycine max
transcript GLYMA09G32920.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G32920.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0031g02240.t01 (Vitis vinifera), 5'ss of exon 11
TGTTGTCCAAGGGATTCCTCTTGTTCAAGGCTCAGACAGATATTTTTGGTTTGGTCGGCCTCAATTAGTTCTTCATCTTATCCATTTTGCTTTGTTCCAGgtatt---caatttgtttcctttaagccgaatca-ttaacaaatgtttagcagatggaacagacaacacatgtatatacagttctggttta--gaattgaaaatgc----------------------------------------------------------------------------------
 || |||||||||||||| ||||| ||||||||||||| ||||||||||||| || ||||||| ||||||||||||||||||||||||| |||||| |||||| |   ||     |      |||   |||  | ||   |||| ||    | |   | |||| |     ||  |  |  || || ||| |  || |||    ||                                                                                   
AGTGGTCCAAGGGATTCCGCTTGTGCAAGGCTCAGACAAATATTTTTGGTTTAGTTGGCCTCAGTTAGTTCTTCATCTTATCCATTTTGTTTTGTTTCAGgtactgagcagcacctccatactaaaatgaactagttcgtaaattttgtaaaaacttagcaga-attctttgagttcaatgtccttgttcattgacttgcttgtgtcatatttatgtcactaatgaaagtagagaaagctacttttcttccactaatggctatctaattgactttttggtgcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21677541|gb|BQ629892.1|BQ629892
EST:     TTGGTCGGCCTCAATTAGTTCTTCATCTTATCCATTTTGCTTTGTTCCAG                         AATGCGTTCCAAATAACATATTTCTTGTGGATATGG
genomic: TTGGTCGGCCTCAATTAGTTCTTCATCTTATCCATTTTGCTTTGTTCCAGgtattcaatt ... tttcttgcagAATGCGTTCCAAATAACATATTTCTTGTGGATATGG