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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATTTCATATATGGACATTGATGGGTATAGATACAAGAGAGATGTTGAATTCTGTTATGATCTAAAACTTCCAAAAAGTTTCTTACCTAAAAATGAAGgtaagccttacaggttcttcaatttcactgttgtttttcttctaatggcgccctgttcaccctttgtgataactggtttaataaaatatcag

Basic information

species Glycine max
transcript GLYMA09G31960.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G31960.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv11s0016g04320.t01 (Vitis vinifera), 5'ss of exon 7
GCTATTTCATATATGGACATTGATGGGTATAGATACAAGAGAGATGTTGAATTCTGTTATGATCTAAAACTTCCAAAAAGTTTCTTACCTAAAAATGAAGgtaagccttacaggttcttcaatttcactgttgtttttcttctaatggcgccctgttcaccctttgtgataactggttt--aataaaatatcag------------------------------------------------------------------------------------------------------------
||| | ||||||   ||||||||||||||| |||||||| ||||||||  ||| ||||||||| ||||||| ||  |   |||| | ||||| ||  ||||||| | | |  | | ||    |||||      || |  |   ||   |   ||  |   | || |  ||       ||  ||   | | |  |                                                                                                            
GCTGTCTCATATGGTGACATTGATGGGTATCGATACAAGCGAGATGTTTTATTTTGTTATGATTTAAAACTCCCTGACGATTTCATTCCTAAGAACCAAGgtaaacat-attgatgctcagctttcatca--attgtcatcacaacctcattcttcttcactttagaaattgtaaaattgcaactcagtcttggagcatttgctttgtttccaactttccatttcatttggaagttattaactgcaatatttttctttggattcaatccatcccccttaatggcttcttaaacatgtaacag

upper sequence: GLYMA09G31960.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv11s0016g04300.t01 (Vitis vinifera), 5'ss of exon 6
GCTATTTCATATATGGACATTGATGGGTATAGATACAAGAGAGATGTTGAATTCTGTTATGATCTAAAACTTCCAAAAAGTTTCTTACCTAAAAATGAAGgtaagccttacaggttcttcaatttcactgttgtttttcttctaatggcgccctgttcaccctttgtgataactggttt--aataaaatatcag------------------------------------------------------------------------------------------------------------
||| | ||||||   |||||||||||||||||||||||| ||||||||  ||| ||||||||| ||||||| ||  |   |||| | ||||| ||  ||||||| | | |  | | ||    |||||      || |  |   ||   |   ||  ||  | || |  ||       ||  ||   | | |  |                                                                                                            
GCTGTCTCATATGGTGACATTGATGGGTATAGATACAAGCGAGATGTTTTATTTTGTTATGATTTAAAACTCCCTGACGATTTCATTCCTAAGAACCAAGgtaaacat-attgatgctcagttttcatca--attgtcatcacaacctcattcttctccactttagaaattgtaaaattgcaactcagtcttggagcatttgctttgtttccaactttccatttcatttggaagttattaactgcaatatttttctttggattcaatccatcccccttaatggcttcttaaacatgtaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16104825|gb|BI892565.1|BI892565
EST:     ATTCTGTTATGATCTAAAACTTCCAAAAAGTTTCTTACCTAAAAATGAAG                         ATGGAGAAGTTGATAGCTTCAAGTTGATCCCTGTTACGCAAGTTGCA
genomic: ATTCTGTTATGATCTAAAACTTCCAAAAAGTTTCTTACCTAAAAATGAAGgtaagcctta ... aaaatatcagATGGAGAAGTTGATAGCTTCAAGTTGATCCCTGTTACGCAAGTTGCA
EST: gi|254313812|gb|GR831441.1|GR831441
EST:     ATTCTGTTATGATCTAAAACTTCCAAAAAGTTTCTTACCTAAAAATGAAG                         ATGGAGAAGTTGATAGCTTCAAGTTGATCCCTGTTACGCAAGTTGCAGAAG
genomic: ATTCTGTTATGATCTAAAACTTCCAAAAAGTTTCTTACCTAAAAATGAAGgtaagcctta ... aaaatatcagATGGAGAAGTTGATAGCTTCAAGTTGATCCCTGTTACGCAAGTTGCAGAAG
EST: gi|7285875|gb|AW598362.1|AW598362
EST:     ATTCTGTTATGATCTAAAACTTCCAAAAAGTTTCTTACCTAAAAATGAAG                         ATGGAGAAGTTGATAGCTTCAAGTTGATCCCTGTTACGCAAGTTGCAGAAG
genomic: ATTCTGTTATGATCTAAAACTTCCAAAAAGTTTCTTACCTAAAAATGAAGgtaagcctta ... aaaatatcagATGGAGAAGTTGATAGCTTCAAGTTGATCCCTGTTACGCAAGTTGCAGAAG
EST: gi|19268704|gb|BM884960.1|BM884960
EST:     ATTCTGTTATGATCTAAAACTTCCAAAAAGTTTCTTACCTAAAAATGAAG                         ATGGAGAAGTTGATAGCTTCAAGTTGATCCCTGTTACGCAAGTTGCAGAAG
genomic: ATTCTGTTATGATCTAAAACTTCCAAAAAGTTTCTTACCTAAAAATGAAGgtaagcctta ... aaaatatcagATGGAGAAGTTGATAGCTTCAAGTTGATCCCTGTTACGCAAGTTGCAGAAG