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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGGAAAAGAGCAAAGTTGATAATGTCAAACTATACGGGAAGATTCGTTATGTACAAGACTATAATCATGAGAAAGTGGTTTCTAGGGGTTCTAAAAAGgtttttaatttgtgcttaaaacatcactctatttcattcttcaagataacttttttcccttttaccctgaactcagatttatttgtgattttttgttcag

Basic information

species Glycine max
transcript GLYMA09G31920.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G31920.1 (Glycine max), 5'ss of exon 17
lower sequence: AT3G18480.1 (Arabidopsis thaliana), 5'ss of exon 15
ACTGGAAAAGAGCAAAGTTGATAATGTCAAACTATACGGGAAGATTCGTTATGTACAAGACTATAATCATGAGAAAGTGGTTTCTAGGGGTTCTAAAAAGgtttttaatttgtgcttaaaacatcactctatttcattcttcaagataacttttttcccttttaccctgaactcagatttatttgtgattttttgttcag
| |||| |||| |||||  || || |||||||| || ||||| || |||||||| ||||||||||| ||||| ||||| |||||  | || || |||||||| |||  ||| |||   | ||||  | ||   | |  |||     |  | |  |    ||||  ||     | | ||   |||   || |         
ATTGGAGAAGACCAAAGCAGACAACGTCAAACTCTATGGGAAAATCCGTTATGTCCAAGACTATAACCATGATAAAGTTGTTTCCCGAGGATCGAAAAAGgtatttgttttctgc--gatacatttccct---tgaaccttttctgtctcgtgatcgggttttttccatggttgatatcgttttccaatctcag------

upper sequence: GLYMA09G31920.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv17s0000g03970.t01 (Vitis vinifera), 5'ss of exon 15
ACTGGAAAAGAGCAAAGTTGATAATGTCAAACTATACGGGAAGATTCGTTATGTACAAGACTATAATCATGAGAAAGTGGTTTCTAGGGGTTCTAAAAAGgtttttaatttgtgcttaaaacatcactctatttcattcttcaagataacttttttcccttttaccctgaactcagatttatttgtgattttttgttcag
||||||||| |  |||| ||| ||||||||||| || ||||||||||||||||| || || ||||||| ||||||||| |||||||| || || || ||||| | | ||            ||   || |  ||  |   | | | |     ||| | ||||   | | || |     || |||      |  |||||||
ACTGGAAAAAACGAAAGCTGACAATGTCAAACTCTATGGGAAGATTCGTTATGTCCAGGATTATAATCTTGAGAAAGTAGTTTCTAGAGGATCAAAGAAGgtatcttatc----------gcaattctatgcttattaaattatggttgtcatttcctcttt---cttaaatttcatcttctttaa----tcatgttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9203341|gb|BE329627.1|BE329627
EST:     ATGTACAAGACTATAATCATGAGAAAGTGGTTTCTAGGGGTTCTAAAAAG                         TATGCTGAAGATCTTGAAAGTGGTTTCATGTCAGATGTGGAATCTAAATAC
genomic: ATGTACAAGACTATAATCATGAGAAAGTGGTTTCTAGGGGTTCTAAAAAGgtttttaatt ... ttttgttcagTATGCTGAAGATCTTGAAAGTGGTTTCATGTCAGATGTGGAATCTAAATAC
EST: gi|51338349|gb|CO982215.1|CO982215
EST:     ATGTACAAGACTATAATCATGAGAAAGTGGTTTCTAGGGGTTCTAAAAAG                         TATGCTGAAGATCTTGAAAGTGGTTTCATGTCAGATGTGGAATCTAAATAC
genomic: ATGTACAAGACTATAATCATGAGAAAGTGGTTTCTAGGGGTTCTAAAAAGgtttttaatt ... ttttgttcagTATGCTGAAGATCTTGAAAGTGGTTTCATGTCAGATGTGGAATCTAAATAC