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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAGgtaacttaatagtgttactgttaatcagtgtttctctcctacaaggtataaaattgtttatattaatgaatgctacaattttgtaatctgcag

Basic information

species Glycine max
transcript GLYMA09G28650.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G28650.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv17s0000g08170.t01 (Vitis vinifera), 5'ss of exon 6
CTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAA---TTCACCCTACAGTTATTTGCCGAGgtaacttaatagtgttactgttaatcagtgtttctctcctacaaggtataaaattgtttatattaatgaatgctacaattttgtaat-ctgcag
||||||||||||||||||| || || || ||||| |||||||   ||||||||||||| || || |||||||||     | ||    ||||    |||  |  | |        |  | |||||  |||| || || |||   | | |   ||| | ||||||
CTGGTGAGATGCTTCATGTTGCGGAAGCTTTCATAGACAAAAACTTTCACCCTACAGTCATATGTCGAGgtaacacctcaatg----tgttgtaaagtactcatatttattggtgatttaaatt--ttattttgatcaatttaaaattgaggtacttctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208048655|gb|GD847558.1|GD847558
EST:     TGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAG                         CATATAACAAAGCTTTGGAGGATGCTATTGCTGTCCTTGACAAAATTGCAA
genomic: TGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAGgtaacttaat ... taatctgcagCATATAACAAAGCTTTGGAGGATGCTATTGCTGTCCTTGACAAAATTGCAA
EST: gi|208176087|gb|GD974318.1|GD974318
EST:     TGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAG                         CATATAACAAAGCTTTGGAGGATGCTATTGCTGTCCTTGACAAAATTGCAA
genomic: TGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAGgtaacttaat ... taatctgcagCATATAACAAAGCTTTGGAGGATGCTATTGCTGTCCTTGACAAAATTGCAA
EST: gi|209725416|gb|BW658278.1|BW658278
EST:     TGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAG                         CATATAACAAAGCTTTGGAGGATGCTATTGCTGTCCTTGACAAAATTGCAA
genomic: TGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAGgtaacttaat ... taatctgcagCATATAACAAAGCTTTGGAGGATGCTATTGCTGTCCTTGACAAAATTGCAA
EST: gi|209700495|gb|BW660895.1|BW660895
EST:     TGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAG                         CATATAACAAAGCTTTGGAGGATGCTATTGCTGTCCTTGACAAAATTGCAA
genomic: TGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAGgtaacttaat ... taatctgcagCATATAACAAAGCTTTGGAGGATGCTATTGCTGTCCTTGACAAAATTGCAA
EST: gi|193333955|gb|FK301343.1|FK301343
EST:     TGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAG                         CATAATAAACAAAGCTTTGGAGGATGCTATTGCTGTCCTTGACAAAATTGC
genomic: TGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAGgtaacttaat ... taatctgcagCATA-TAA-CAAAGCTTTGGAGGATGCTATTGCTGTCCTTGACAAAATTGC
EST: gi|207717196|gb|GD697690.1|GD697690
EST:     CGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAG                         CATATAACAAAGCTTTGGAGGATGCTATTGCTGTCCTTGACAAAATTGCAA
genomic: CGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAGgtaacttaat ... taatctgcagCATATAACAAAGCTTTGGAGGATGCTATTGCTGTCCTTGACAAAATTGCAA
EST: gi|213618229|gb|DB972999.1|DB972999
EST:     TGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAG                         CATATAACANAGCTTTGGAGGATGCTATTGCTGTCCTTGACAAAATTGCAA
genomic: TGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAGgtaacttaat ... taatctgcagCATATAACAAAGCTTTGGAGGATGCTATTGCTGTCCTTGACAAAATTGCAA