Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTCTGCATCTGTACAAGTGCTTCCTGGAAAGGTTTTGGTTCCTGCAGCTGTTGATCAAGTTCAGGGCCAAGCACTAGCAGCACTGCAAGTTTTAAAGgtaattatttgttcttattctcatgtatcaaggtgacataatgctctgtatatttatagtttagttctagttttttttatatatattttttacactggtt...

Basic information

species Glycine max
transcript GLYMA09G25200.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G25200.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv16s0050g00600.t01 (Vitis vinifera), 5'ss of exon 4
AGTTTCTGCATCTGTACAAGTGCTTCCTGGAAAGGTTTTGGTTCCTGCAGCTGTTGATCAAGTTCAGGGCCAAGCACTAGCAGCACTGCAAGTTTTAAAGgtaattatttgttcttattctcatgtatcaaggtgacataatgctct-gtatatttatagtttagttctagttttttttatatatattttttacactggtt----
|||||||| |  | |  | |||||||||||| ||||| | |||||||||| |||||||||||| ||||| || || ||||||||| |||| ||||||||||||    | || | | ||||   || ||  |  |||   | ||| |  || | ||    ||| | ||     | || ||  || | |    | ||||   |    
AGTTTCTGAAAGTCTGAAGGTGCTTCCTGGACAGGTTGTTGTTCCTGCAGTTGTTGATCAAGTCCAGGGACAGGCGCTAGCAGCATTGCAGGTTTTAAAGgtaccattctgctttcattcc--tgcatttaaatga---attgcccgagtgttttagcggttcattttgttctcttcttgaatctttggaatccactccattgtc