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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAACAGGGCAATCATGTCCATTATCATTCAAGGGAAGCCCCTATTGGATGGCTCCTGAGgttgtaatattttctctgttactttcagttctttatagattcaattacatattggttttgtgacttgatagctttgcattctgatttttcag

Basic information

species Glycine max
transcript GLYMA09G24970.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G24970.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv16s0050g00770.t01 (Vitis vinifera), 5'ss of exon 7
ATAACAGGGCAATCATGTCCATTATCATTCAAGGGAAGCCCCTATTGGATGGCTCCTGAGgttgtaatattttctct-gttactttcagttctttatagattcaattacatattggttttgtgacttgatagctttgcattctgatttttcag
|| || ||||| |||||||| |||||||||||||||||||| || |||||||| ||||||||   ||| |||| ||| |  |    |   ||| |  |  |   |  |  | ||| |  | |  |||  |    |       || |   ||||
ATCACTGGGCAGTCATGTCCTTTATCATTCAAGGGAAGCCCATACTGGATGGCACCTGAGgtcagaatgttttttcttgccataaccttatctcttcatttatgacaagcttttgatagtatttcttacttctctgttcagttgttcgctcag

upper sequence: GLYMA09G24970.2 (Glycine max), 5'ss of exon 7
lower sequence: PP1S387_39V6.1 (Physcomitrella patens), 5'ss of exon 7
ATAACAGGGCAATCATGTCCATTATCATTCAAGGGAAGCCCCTATTGGATGGCTCCTGAGgttgt-----aatattttctctgttactttcagttcttta---------tagattcaattacatattggttttgtg--acttgatagctttgcattctgatttttcag-------------------------------------------------
||  | |  ||||| | ||     || |||||||||||||| ||||||||||||||||||||        |||     ||  | || ||||| || | ||         ||||| |  ||  | |||| || | |    |||     || | || |  | ||| |                                                    
ATTTCTGCTCAATCTTTTCTCCAGTCTTTCAAGGGAAGCCCTTATTGGATGGCTCCTGAGgtaagtgataaatgcacacttggctagtttcatttgtatagaaagcatgtagatgctcttcaagattgattgtattttgcttatcttctatacaattagttttgttgctgttaggacttcctctctaaaagagcttcacatggctctctactggcag

upper sequence: GLYMA09G24970.2 (Glycine max), 5'ss of exon 7
lower sequence: PP1S8_299V6.1 (Physcomitrella patens), 5'ss of exon 9
ATAACAGGGCAATCATGTCCATTATCATTCAAGGGAAGCCCCTATTGGATGGCTCCTGAGgt---tgtaatat----------tttctctgttactt--tcagt-tctttatagattcaa-----ttacatattggttttgtgacttgatagctttgcattctgatttttcag----------------------------------
||  | |  ||||| | ||     || || ||||||||||| ||||||||||||||||||||   ||||| ||          |  |||| || ||   | ||  ||| ||||| || ||     ||| || | | || | |    |   ||   |     ||   | |  |                                   
ATTTCTGCTCAATCTTTTCTCAAGTCCTTTAAGGGAAGCCCGTATTGGATGGCTCCTGAGgtatgtgtaaaatgcaatcctagtagctcttttgctcaattagcatctatatagttttaaagtggttatatttggcttatatttaatacaagtagtaggacctatctctctaaatatgagcctttgtgcatggtttccttctgatag

upper sequence: GLYMA09G24970.2 (Glycine max), 5'ss of exon 7
lower sequence: PP1S10_200V6.2 (Physcomitrella patens), 5'ss of exon 9
ATAACAGGGCAATCATGTCCATTATCATTCAAGGGAAGCCCCTATTGGATGGCTCCTGAGgt----------tgtaatattttctctgtt-actttcagttctttatagattcaattacatattggttttgtgacttgatagctttgcat---tctgatttttcag-----------------------------------------------------
||  | |  ||||| | ||     || |||||||||||||| || |||||||||||||||||           |||  |||   | || | ||| |       ||| | |   | | |   |     | ||    | |   |  || | |   |    |  |  ||                                                     
ATTTCTGCTCAATCCTTTCTCCAGTCTTTCAAGGGAAGCCCTTACTGGATGGCTCCTGAGgtatgtgtcaaacgtataattgattatgctgactgtttacatcttacaaacatactcatccaaatcgtctgcatttagccggtattacttaaatgcagtgatggagctgttagagattcccctcctcaattacgatttaacatgattcttaattggcag