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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTATCAAAACAAGTTGTCTACTATAAGGGTCATGAAGTACACAATCTCAATGAATTGGAATACATAAATGGTGAAGTTTGGGCAAATGTTTTACCGgtatgcctctgtgtgattactgattaactatgatttctgttagagaaaatatatctctttcccttaaattctaattttagccatgtatggatgtatgatgtctttggtccaaggttctctgtttggctagattttcattgaggttgatatttctttgtgtag

Basic information

species Glycine max
transcript GLYMA09G24450.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G24450.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os06g01410.1 (Oryza sativa), 5'ss of exon 7
CTGTATCAAAACAA--GTTGTCTACTATAAGGGTCATGAAGTACACAATCTCAATGAATTGGAATACATAAATGGTGAAGTTTGGGCAAATGTTTTACCGgt-atgcctctgtgtgattactgattaactatgatttctgttagagaaaatatatctctttcccttaaattctaattttagccatgtatggatgtatgatgtctttggtccaaggttctctgt-ttggctagattttcattgaggttgatatttctttgtgtag
    || || |||     |||  | ||| | | | ||||||| | | |||| |||||| ||||||| ||||| |||||||| ||||||||||| |  | ||| |  |  |||||       ||  | || ||   ||  |||||     |||     ||| | | |||| | |  || |||  ||  |||        ||    |  |       ||||| || ||   |  |  | ||| |    |                 
--TCATGAAGACAGTGACTGTGAAATATCAAGATAATGAAGTCCCCTATCTTAATGAACTGGAATATATAAACGGTGAAGTATGGGCAAATGTCTGGCAGgttagacagctgtgccccctttg-ctgacaattgctt--gttagttgttatag----cttacacgtaaaatttgtttgtagtaatacatgatcaaccaatacaatgtg-----aattctcagtattcatttcaaatccatggtatatag---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393930|gb|EV263801.1|EV263801
EST:     TCAATGAATTGGAATACATAAATGGTGAAGTTTGGGCAAATGTTTTACCG                         ACTAACTGCATTGTAAGAATCTCTCCGAGTGATGGCAGTGTTCTTGGATGG
genomic: TCAATGAATTGGAATACATAAATGGTGAAGTTTGGGCAAATGTTTTACCGgtatgcctct ... ctttgtgtagACTGACTGCATTGTAAGAATCTCTCCGAGTGATGGCAGTGTTCTTGGATGG