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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTACTGTTAATGAGAAACCTGTCCATCAATTTAACTAGCCCAGATTTTGAGCATCATgtaagtattcatgctctgacctttagattgctataaatatctagcatgtcatgctgagtaattgcctgccctgtataagcaccattagagttcattttgg...

Basic information

species Glycine max
transcript GLYMA09G24400.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G24400.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g45670.1 (Oryza sativa), 5'ss of exon 7
GTGCTACTGTTAATGAGAAACCTGTCCATCAATTTAACTAGCCCAGATTTTGAGCATCATgtaagta-ttcatgctctgacctttagattgctataaatatctagcatgtcatgctgagtaattgcctgccctgtataagcaccattagagttcattttgg--
|   |  ||||||||||||| || ||||||||||| ||||| || ||||||||  |||| ||| | |  ||     |   ||| |||| | |  |     | |    || |||    | |   | |         | ||   || ||||| ||    |     
GCATTGTTGTTAATGAGAAATCTCTCCATCAATTTGACTAGTCCTGATTTTGAAGATCAGgtacgcagctctccagcatgcctctagaattcagtttggctgtgtactgccatt---acttccttcaaaagaaagaaaaatgcctttagaatttggatcatgc

upper sequence: GLYMA09G24400.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv16s0050g01180.t01 (Vitis vinifera), 5'ss of exon 7
GTGCTACTGTTAATGAGAAACCTGTCCATCAATTTAACTAGCCCAGATTTTGAGCATCATgtaagta-----ttcat---gctctgacctttagattgct--ataaatatctagcatgtcatgctgagtaattgcctgccctgtataagcaccattagagttcattttgg
||| | ||||| ||||||||||| ||||||||||| || ||||| ||||||||| |||||||||||      ||||    | |||    || |  || ||  ||   ||  ||     ||||  || | ||    | || |   |   | |  |||  |           
GTGTTGCTGTTGATGAGAAACCTCTCCATCAATTTGACCAGCCCTGATTTTGAGGATCATgtaagtgccattttcacatggttcttgtattcaagtttcttgatgcttaattatt-catcatattgtgaaagatgcagcacctcactggtaaaattgcata---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254334103|gb|GR849021.1|GR849021
EST:     TAATGAGAAACCTGTCCATCAATTTAACTAGCCCAGATTTTGAGCATCAT                         AGAAAGCTGCTTTCATCATATGAGGTTGAACCAGAGAGAGATAATAACTAT
genomic: TAATGAGAAACCTGTCCATCAATTTAACTAGCCCAGATTTTGAGCATCATgtaagtattc ... attcatacagAGAAAGCTGCTTTCATCATATGAGGTTGAACCAGAGAGAGATAATAACTAT
EST: gi|6725335|gb|AW309734.1|AW309734
EST:     TAATGAGAAACCTGTCCATCAATTTAACTAGCCCAGATTTTGAGCATCAT                         AGAAAGCTGCTTTCATCATATGAGGTTGAACCAGAGAGAGATAATAACTAT
genomic: TAATGAGAAACCTGTCCATCAATTTAACTAGCCCAGATTTTGAGCATCATgtaagtattc ... attcatacagAGAAAGCTGCTTTCATCATATGAGGTTGAACCAGAGAGAGATAATAACTAT