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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATAAATCGGGTTGCACCTGCTTTTCTCATACCTGTTTTATTCTCAGTCGTCTGCATATTTTTGGGAATATTTTTGGCAGGGAAGGATCATCCTTCAGgtttgtattttgctctgtccccttttcccaattttccactgctggcttgtccttctgcaaccacttttctgttgatagaagatccatgttttagctttatccagcattagcttacatgtagag

Basic information

species Glycine max
transcript GLYMA09G10390.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G10390.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G30450.1 (Arabidopsis thaliana), 5'ss of exon 8
ATGATAAATCGGGTTGCACCTGCTTTTCTCATACCTGTTTTATTCTCAGTCGTCTGCATATTTTTGGGAATATTTTTGGCAGGGAAGGATCATCCTTCAGgtttgtattttgctctgtccccttttcccaattttccactgctggcttgtccttctgcaaccacttttctgttgatagaagatccatgttttagctttatccagcattagcttacatgtagag
||||| |||||||||||||||||||| ||| |||| |||||  ||||  || ||||||||||  | || ||||||||||||  ||  ||| |||||    |   |||  ||| |   |    || |   ||     |   ||  | || |  ||| |        ||    ||  |       || ||||||   || | |                      
ATGATCAATCGGGTTGCACCTGCTTTCCTCGTACCCGTTTTGCTCTCTATCTTCTGCATATTCATCGGGATATTTTTGGCAAAGACAGATGATCCT----GACAgtaagttgtttctttatattgttggaaacaggcgtggc--gtttatttttccgttgaattgttaaccttccttttgttcccttgttttgatttgaacag--------------------

upper sequence: GLYMA09G10390.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv10s0003g04530.t01 (Vitis vinifera), 5'ss of exon 8
ATGATAAATCGGGTTGCACCTGCTTTTCTCATACCTGTTTTATTCTCAGTCGTCTGCATATTTTTGGGAATATTTTTGGCAGGGAAGGATCATCCTTCAGgtttgtattttgctctgtccccttttcccaa---ttttccactgctggcttgtccttctgcaaccacttttct--gttgatagaagatccatgttttagctttatccagcattagcttacatgtagag
||||| |||||||||||||||||||| || |||||||||||||||||  |  ||||||||||| | ||     |||||||| | |||||||| ||| | |||  || ||||  | | |    |||| |  |   ||||  | |  |   |||      |  || | ||  | |  |||| | |   |   | ||   | ||                           
ATGATCAATCGGGTTGCACCTGCTTTCCTTATACCTGTTTTATTCTCCTTGTTCTGCATATTTGTTGGGGCTGTTTTGGCAAGAAAGGATCACCCTGCTGgtgagtttttttttttttttggtttttcttaattttttttaattatacattgcttacattaaatccctccttttggttgctggggaaaata-gtggaaact---------------------------