Sequence
atgc intronic sequence ATGC exonic sequenceAAAGCTTTTTATGTTGGTAAGGAGTGAGTTGAATCTTGACCTCAAAAACATCAAGCAGGAGCAGGCTAAGTTTTGGAAGCAACATCCTGCGCTGGTTAAGgtatcttcttgtgtggctaagcctaatgaagtgcttcatgttttttctgggaatacaagtgttctattctgattttctctgccttttatatgctgacatatatgctattttctttcag
Basic information
species | Glycine max |
transcript | GLYMA09G08830.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G08830.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G79940.3 (Arabidopsis thaliana), 5'ss of exon 7
AAAGCTTTTTATGTTGGTAAGGAGTGAGTTGAATCTTGACCTCAAAAACATCAAGCAGGAGCAGGCTAAGTTTTGGAAGCAACATCCTGCGCTGGTTAAGgtatcttcttgtgtggctaagcctaatgaagtgcttcatgttttttctgggaatacaagtgttctattc-tgattttctctgccttttatatgctgacatatatgctattttctttcag
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GAAGCTCTTTATGTCTGTTAGGAGTGAACTAAATTTGGACCTGAAGAACATGAAGCAAGAGCAAGCTAAGTTTTGGAAACAGCATCCTGCCATAGTGAAGgtgaattttaaaattatgcaac----tgtaatgctaaatattggat----aaactgaaatactcacttcctcaatttctgtacag----------------------------------
upper sequence: GLYMA09G08830.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv16s0050g01460.t01 (Vitis vinifera), 5'ss of exon 6
AAAGCTTTTTATGTTGGTAAGGAGTGAGTTGAATCTTGACCTCAAAAACATCAAGCAGGAGCAGGCTAAGTTTTGGAAGCAACATCCTGCGCTGGTTAAGgtatcttcttgtgtggctaagcctaatgaagtgcttcatgttttttctgggaatacaagtgttctattctgattttctctgccttttatatgctgacatatatgctattttctttcag
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GAAACTGTTCATGTTAGTAAGGAGTGAGTTAAACTTGGACCTTAAGAACATTAAGCAAGAGCAGGCAAAGTTTTGGAAGCAGCATCCATCACTAGTTAAGgtaatttgttc----accaagttttg------gctatataaagcagtta--aagatcagcgtcttagtct----ttaatgaagcatcagcttcttacttctttgccttttcctttcag
upper sequence: GLYMA09G08830.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ37559 (Selaginella moellendorffii), 5'ss of exon 6
AAAGCTTTTTATGTTGGTAAGGAGTGAGTTGAATCTTGACCTCAAAAACATCAAGCAGGAGCAGGCTAAGTTTTGGAAGCAACATCCTGCGCTGGTTAAGgtatcttcttgtgtggctaagcctaatgaagtgcttcatgttttttctgggaatacaagtgttctattctgattttctctgccttttatatgctgacatatatgctattttctttcag
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GAAGCTTTTTGTTGTAGTACGAAGCGAACTTAACCTTGATCCCAAGAATCTAAAGCAAGAACAGGCTAAGTTTTGGAAGCAGCATCCTGCTCTAGTCAAGgtaatagtttcgttttcttagtatcttggttttcattacgttgtggcag---------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254336435|gb|GR842614.1|GR842614EST: TCAAGCAGGAGCAGGCTAAGTTTTGGAAGCAACATCCTGCGCTGGTTAAG ACAGAGCTGTTAGTTCAAGCTCAGTTGACCCGTGAATTTGCAGCTTTGTCG
genomic: TCAAGCAGGAGCAGGCTAAGTTTTGGAAGCAACATCCTGCGCTGGTTAAGgtatcttctt ... tttctttcagACAGAGCTGTTAGTTCAAGCTCAGTTGACCCGTGAATTTGCAGCTTTGTCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAGCTTTTTATGTTGGTAAGGAGTGAGTTGAATCTTGACCTCAAAAACATCAAGCAGGAGCAGGCTAAGTTTTGGAAGCAACATCCTGCGCTGGTTAAGgtatcttcttgtgtggctaagcctaatgaagtgcttcatgttttttctgggaatacaagtgttctattctgattttctctgccttttatatgctgacatatatgctattttctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA