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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGGATAGCAACTGTAGCAGCAGCAATTGATGATCGTAGATATAAAAACCATTTGATCCTTGGAAATGGAAAAATCTTAGCCGGACTTGGATTGTCACgtgagttttccaacttcctactatatttcttaggatgtaattttgttaatcatggactggtactaggagataaaatgctgatgattatggtggaaatcta...

Basic information

species Glycine max
transcript GLYMA09G06640.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G06640.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G30020.1 (Arabidopsis thaliana), 5'ss of exon 7
CCATGGATAGCAACTGTAGCAGCAGCAATTGATGATCGTAGATATAAAAACCATTTGATCCTTGGAAATGGAAAAATCTTAGCCGGACTTGGATTGTCACgtgagttttccaacttcctactatatttcttaggat----------gtaattttgttaatcatggactggtactaggagataaaatgct--gatgattat--ggtggaaatcta-------------
|| |||||| | ||||| || || |||||||||||||| ||||| ||||| ||| |||  ||||||||||| |||||  | |||||| | ||||| || ||| |||||  |   |  ||  | ||  | |   |||          |||||||  ||||  |  ||||| || |      | |    ||    || || |  | || |    ||             
CCTTGGATAACTACTGTGGCTGCTGCAATTGATGATCGCAGATACAAAAATCATCTGACTCTTGGAAATGGTAAAATGCTTGCCGGAATAGGATTATCTCgtaagtttctcctttctctgatctagatatgtagatccacacaatagtaatttatttaagaagagactgttagtttattctgagtctctctattggttttttgatgaatcattatgcgtttgtgcag

upper sequence: GLYMA09G06640.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G19170.1 (Arabidopsis thaliana), 5'ss of exon 7
CCATGGATAGCAACTGTAGCAGCAGCAATTGATGATCGTAGATATAAAAACCATTTGATCCTTGGAAATGGAAAAATCTTAGCCGGACTTGGATTGTCACgtgagttttccaact-tcctactatatttcttaggatgtaattttgttaatcatggactggtactaggagataaaatgctgatgattatggtggaaatcta
|| |||||| | ||||| || || |||||||||||||| ||||| ||||| ||| ||| |||||| |||||||||||  | || ||  | || || || ||| |||      | | |  |  || ||||   | ||   |     ||| ||  |    || |  |    ||| || || | | |  | |  || |      
CCCTGGATAACTACTGTCGCCGCTGCAATTGATGATCGAAGATACAAAAATCATCTGACCCTTGGGAATGGAAAAATGCTTGCAGGGATGGGCTTATCTCgtaagtaaaaagaatgttattttacatttggcatgaccgatacgagtttatattttcatgttttt----gatgaattgtt-acgtattttctgcag-----

upper sequence: GLYMA09G06640.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv11s0103g00550.t01 (Vitis vinifera), 5'ss of exon 7
CCATGGATAGCAACTGTAGCAGCAGCAATTGATGATCGTAGATATAAAAACCATTTGATCCTTGGAAATGGAAAAATCTTAGCCGGACTTGGATTGTCACgtgagttttccaacttcctactatatttcttaggatgtaattttgttaatcatggactggtactaggagataaaatgctgatgattatggtggaaatcta
|| ||||| ||| ||||||| |||||||| |||||||||||||| ||||||||| | |   | |||||||| ||||||||| | ||| |||| ||||||||| |||| |  |    |  | |    ||   |   |    ||| | |   | | |      | || ||   ||  ||||||  | |   ||  ||    |
CCGTGGATTGCATCTGTAGCTGCAGCAATCGATGATCGTAGATACAAAAACCATCTTACTTTGGGAAATGGGAAAATCTTACCTGGAATTGGTTTGTCACgtaagttctatataacctgaattatgttggaattctactgtttaggttggccttgggaaacaatatgattcaatctgctgaatactggagttcaatcaca