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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGAGGAGTGCTATTTCTTCGGTTCCTTTTGTCACTTGTTGATGAATCAGAAAAGATAAGGCAGTTAGCGGATTTTCTCTTTGGAAATATTTTGAAAGgtctgaaactttatcttgatagttatacttgccattatatataaattaaaaaatatgtttgtcattggattttaactattgtgttttcctcaccag

Basic information

species Glycine max
transcript GLYMA09G04940.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G04940.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv05s0020g01160.t01 (Vitis vinifera), 5'ss of exon 6
TGGAGAGGAGTGCTATTTCTTCGGTTCCTTTTGTCACTTGTTGATGAATCAGAAAAGATAAGGCAGTTAGCGGATTTTCTCTTTGGAAATATTTTGAAAGgtctgaaactttatcttgatagttat--acttgccattatatataaattaaaaaatatgtttgtc---attggatttt--aactattgtgttttcctcaccag
||||||||||| || || || || |||||||| || |||||||||||||||||| ||||||||| | | || ||||| |||||||| ||||| |||||||||     ||  |   || | |||||   |  |  |     ||  |||  |  |  ||||||| ||   | || ||| |  | ||  |||||||   |  |   
TGGAGAGGAGTACTCTTCCTCCGATTCCTTTTATCTCTTGTTGATGAATCAGAAGAGATAAGGCGGCTTGCAGATTTCCTCTTTGGGAATATCTTGAAAGgtt----acactgcttttacagttactaatctatctcgtcatggaaacaatgatttatgtttatccagagtgaattcttcatctgatgtgtttggattgcag-