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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGGAATGTTGAAGGTGAAAGTGATTAAAGGCACAAATTTAGCTATCAGAGATATAAAGTCAAGTGATCCATATGTTGTTTTGAGCCTTGGCCAGCAGgttggtatcactaaatgatcttgggaaactgttgctctgtatcttctatttatagttgtaaaatcagaaacagtaataattttctttctgaaattgatttggtgctattgcttaatgcctgcag

Basic information

species Glycine max
transcript GLYMA09G02830.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G02830.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G05330.1 (Arabidopsis thaliana), 5'ss of exon 7
TATTGGAATGTTGAAGGTGAAAGTGATTAAAGGCACAAATTTAGCTATCAGAGATATAAAGTCAAGTGATCCATATGTTGTTTTGAGCCTTGGCCAGCAGgttggtatcactaaatgatcttgggaaactgttgct--ctgtatcttctatttatagttgtaaaatcagaaacagtaataattttctttctgaaattgatttggtgctattgcttaatgcctgcag
||||||| ||||||||||||   | |  || || || || ||||| |||||||| || | ||||||||||||||||||||| ||||  || ||  |||| ||  ||        ||   ||| | |   | ||  |  || ||  |  | || || | ||| ||    ||   |  |||  | || ||| |  |                                
TATTGGATTGTTGAAGGTGACTATTAAGAAGGGAACTAACTTAGCAATCAGAGACATGATGTCAAGTGATCCATATGTTGTGTTGAATCTAGGGAAGCAAgtaagtg-------atttgctttgcatctttttattagctttacttcttgttgat-gctgtgaatcttgagtaa--aattgtcttgtttattcag-------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31306285|gb|CD391488.1|CD391488
EST:     GAGATATAAAGTCAAGCGATCCATATGTTGTTTTGAGCCTTGGCCAGCAG                         ACTGTCCAGACAACTATAATAAGGAGCTACTTGAATCCAGTCTGGAATGAG
genomic: GAGATATAAAGTCAAGTGATCCATATGTTGTTTTGAGCCTTGGCCAGCAGgttggtatca ... atgcctgcagACTGTCCAGACAACTATAATAAGGAGCAACTTGAATCCAGTCTGGAATGAG
EST: gi|120495184|gb|EH223351.1|EH223351
EST:     GAGATATAAAGTCAAGTGATCCATATGTTGTTTTGAGCCTTGGCCAGCAG                         ACTGTCCAGACAACTATAATAAGGAGCAACTTGAATCCAGTCTGGAATGAG
genomic: GAGATATAAAGTCAAGTGATCCATATGTTGTTTTGAGCCTTGGCCAGCAGgttggtatca ... atgcctgcagACTGTCCAGACAACTATAATAAGGAGCAACTTGAATCCAGTCTGGAATGAG
EST: gi|22928442|gb|BU545581.1|BU545581
EST:     GAGATATAAAGTCAAGTGATCCATATGTTGTTTTGAGCCTTGGCCAGCAG                         ACTGTCCAGACAACTATAATAAGGAGCAACTTGAATCCAGTCTGGAATGAG
genomic: GAGATATAAAGTCAAGTGATCCATATGTTGTTTTGAGCCTTGGCCAGCAGgttggtatca ... atgcctgcagACTGTCCAGACAACTATAATAAGGAGCAACTTGAATCCAGTCTGGAATGAG
EST: gi|120495304|gb|EH223471.1|EH223471
EST:     GAGATATAAAGTCAAGTGATCCATATGTTGTTTTGAGCCTTGGCCAGCAG                         ACTGTCCAGACAACTATAATAAGGAGCAACTTGAATCCAGTCTGGAATGAG
genomic: GAGATATAAAGTCAAGTGATCCATATGTTGTTTTGAGCCTTGGCCAGCAGgttggtatca ... atgcctgcagACTGTCCAGACAACTATAATAAGGAGCAACTTGAATCCAGTCTGGAATGAG