1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TACTTAGATCGGCCAGGGGTTAGTTTTTGTACCCGAACTACATATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGAGCACCCAAGgtattttttctcttctttcttattatccttttcctagatttttttttattcctaaattgttgatatgatgttagcaatcactgtgcacaaccctcaaatagggcttgttactaactgttgattaatcaatcag
species | Glycine max |
transcript | GLYMA09G02070.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGAGCACCCAAG TGGAGCTGTTCATTTCATGGCTTCAAACAATGACTCTGGAGTTAGAGACTTEST: gi|193491917|gb|FK456511.1|FK456511
genomic: TATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGAGCACCCAAGgtattttttc ... aatcaatcagTGGAGCTGTTCATTTCATGGCTTCAAACAATGACTCTGGAGTTAGAGACTT
EST: TATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGAGCACCCAAG TGGAGCTGTTCATTTCATGGCTTCAAACAATGACTCTGGAGTTAGAGACTTEST: gi|208130463|gb|GD926822.1|GD926822
genomic: TATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGAGCACCCAAGgtattttttc ... aatcaatcagTGGAGCTGTTCATTTCATGGCTTCAAACAATGACTCTGGAGTTAGAGACTT
EST: TATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGAGCACCCAAG TGGAGCTGTTCATTTCATGGCTTCAAACAATGACEST: gi|193661345|gb|FK604371.1|FK604371
genomic: TATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGAGCACCCAAGgtattttttc ... aatcaatcagTGGAGCTGTTCATTTCATGGCTTCAAACAATGAC
EST: TATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGAGCACCCAAG TGGAGCTGTTCATTTCATGGCTTCAAACAATGACTCTGGAGTTAGAGACTT
genomic: TATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGAGCACCCAAGgtattttttc ... aatcaatcagTGGAGCTGTTCATTTCATGGCTTCAAACAATGACTCTGGAGTTAGAGACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTTAGATCGGCCAGGGGTTAGTTTTTGTACCCGAACTACATATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGAGCACCCAAGgtattttttctcttctttcttattatccttttcctagatttttttttattcctaaattgttgatatgatgttagcaatcactgtgcacaaccctcaaatagggcttgttactaactgttgattaatcaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT