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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACACTGATTTTGATGCTAAACCAATGGTCATGCTTCTTGGTCAATATTCAACAGGAAAAACTACATTTATAAAACATTTGTTAAAATGTGATTATCCAGgtaggttaagttcttgacaatctactcattaacattgtagtaatttcttcattgataaaattgatgactgattgattcatgatcctgactctgtag

Basic information

species Glycine max
transcript GLYMA09G01160.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G01160.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os04g57350.1 (Oryza sativa), 5'ss of exon 9
AACACTGATTTTGATGCTAAACCAATGGTCATGCTTCTTGGTCAATATTCAACAGGAAAAACTACATTTATAAAACATTTGTTAAAATGTGATTATCCAGgta----ggttaagttcttgacaatctactcattaacattg----tagtaatttct----tcattgataaaattgatgactgattgattcatgatcctgactctgtag------------
| || |||||| ||||| || |||||||||||| | || ||||| ||||| ||||||||||| ||||| ||||| |||||  | ||     ||||||||||||    || | |  | |||     ||  || ||   ||||    |  || ||||     || ||    | |||      |||   |    | |   |  ||  || |            
AGCAGTGATTTCGATGCGAAGCCAATGGTCATGTTGCTGGGTCAGTATTCCACAGGAAAAACCACATTCATAAAGCATTTACTGAAGACAAATTATCCAGgtaaacaggatgaaatattgtgttccttttccttcttattgagaattatattttccattctctttctacacattttcccttgaaaaaaatgtaacaatatctgagttgtttctcttgcag

upper sequence: GLYMA09G01160.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G05520.1 (Arabidopsis thaliana), 5'ss of exon 9
AACACTGATTTTGATGCTAAACCAATGGTCATGCTTCTTGGTCAATATTCAACAGGAAAAACTACATTTATAAAACATTTGTTAAAATGTGATTATCCAGgtaggttaagttcttgacaatctactcattaacattgtagtaatttcttcattgataaaattgatgactgattgattcatgatcctgactctgtag-
|  |  ||||||||||| ||||||||||| |||||| | ||||||||||| || |||||||| |||||||||||||| ||| |   |||||| || |||||||  ||   || ||  |  |||| || |    | || |   | | ||||| | ||  |  ||||       |    |||  ||||     |||   
AGTAGCGATTTTGATGCCAAACCAATGGTAATGCTTTTGGGTCAATATTCCACCGGAAAAACAACATTTATAAAACACTTGCTCGGATGTGACTACCCAGgtaacttgctttgtttcc--tctaatcctagcaaatgcaaggaat-cttcagttatctatctgat------cttcaccattgtcctcttgttgtcag

upper sequence: GLYMA09G01160.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0516g00020.t01 (Vitis vinifera), 5'ss of exon 10
AACACTGATTTTGATGCTAAACCAATGGTCATGCTTCTTGGTCAATATTCAACAGGAAAAACTACATTTATAAAACATTTGTTAAAATGTGATTATCCAGgtaggttaagttcttgacaatctactcattaacattgtagtaatttcttcattgataaaattgatgactgattgattcatgatcctgactctgtag----
 | | ||| |||||||| ||||| ||||| |||||| | ||||| |||||||| || ||||||||||| |||||||||||  |   |||| |||  ||||||| || || ||  ||    |||  || |     ||  ||| |   ||   |||| || | |   |  |  | | ||  |  | |   || | | |    
CATAGTGACTTTGATGCCAAACCCATGGTTATGCTTTTGGGTCAGTATTCAACTGGGAAAACTACATTCATAAAACATTTACTCGGATGTAATTTCCCAGgtaagtaaactttctgtt--tctgttcttccctttttcagttacaacta-gttgagaacaatttcgtttcttggcttactatttccttctttttggatag