Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATATTCTGAAATGATTGGAAATGTTATGATAGATGCCCGATCAACTGGAAAATATTACCATTgtaagtacataaatttgagaaactcttcagatctatatagcaattaaagactgaagaccaatgcttaatggaccaccttggacattgattgctgttacta...

Basic information

species Glycine max
transcript GLYMA09G01050.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G01050.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os06g13810.1 (Oryza sativa), 5'ss of exon 7
ATATATTCTGAAATGATTGGAAATGTTATGATAGATGCCCGATCAACTGGAAAATATTACCATTgtaagtacataaatt---tgagaaac-tcttcagatctatatagcaattaaagactgaagaccaatgcttaatggaccaccttggacattgattgctgttacta
||||| |||||||||||||| ||||||||||  ||||| || ||||| || || || ||||| |||||||   |   ||   ||  | || | | |  | ||||  |    |      || || |   |     | | ||         ||  || ||  | | |   
ATATACTCTGAAATGATTGGTAATGTTATGACTGATGCACGCTCAACCGGGAAGTACTACCACTgtaagtttctgttttggttgtcagacatatgccaaactatg-atttttgttttcctaaacatggaaagagagttgataggagcaaactatgtttagtttga---

upper sequence: GLYMA09G01050.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G059151_T01 (Zea mays), 5'ss of exon 7
ATATATTCTGAAATGATTGGAAATGTTATGATAGATGCCCGATCAACTGGAAAATATTACCATTgtaagtacataaatttgagaaactcttcagatc--tatatagcaattaaagactg--aagaccaatgct-taatggaccaccttggacattgattgctgttacta
||||| |||||||||||||| ||||||||||  |||||  |||| ||||||||||| ||||| |||||||  || |     || |||     || |    || ||  | |||  ||||   |||     | || || || |  |   |  |||     || ||  |   
ATATACTCTGAAATGATTGGCAATGTTATGACTGATGCGAGATCCACTGGAAAATACTACCACTgtaagtttatcagc---agcaacaaaataggttgtcatttaatagttatggactagtaagttggttcctctattgaaaaattatacacaccatgtgatgccat--

upper sequence: GLYMA09G01050.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G04040.1 (Arabidopsis thaliana), 5'ss of exon 7
ATATATTCTGAAATGATTGGAAATGTTATGATAGATGCCCGATCAACTGGAAAATATTACCATTgtaagtacataaatttgagaaactcttcagatctatatagcaattaaagactgaagaccaatgcttaatggaccaccttggacattgattgctgttacta
||||| || ||||||||||||||||||||||| ||||| || || || |||||||| || || |||||||   |   |||      |||||   | | | ||     ||     ||  | || |||  ||| |  | ||  |      ||||||     ||   
ATATACTCAGAAATGATTGGAAATGTTATGATCGATGCGCGTTCCACGGGAAAATACTATCACTgtaagtttgt---ttt------ctctt---agcaaaatgaatttt-----cttgatacaaat--ttactatatcatttcatctgttgattatctctatag

upper sequence: GLYMA09G01050.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv10s0116g00360.t01 (Vitis vinifera), 5'ss of exon 7
ATATATTCTGAAATGATTGGAAATGTTATGATAGATGCCCGATCAACTGGAAAATATTACCATTgtaagtacataaatttgagaaactcttcagatcta-tatagcaattaaagactgaagaccaatgcttaatg--gaccaccttggacattgattgctgttacta
|| ||| | ||||||||||| ||||| ||||||||||| || |||||||||||||| || || |||||||| ||  |   |  ||| || | | | |   |     |  |    | |     | ||||  | ||   ||     ||    |||||    ||| | ||
ATTTATGCAGAAATGATTGGGAATGTCATGATAGATGCTCGCTCAACTGGAAAATACTATCACTgtaagtatattgagg-gtcaaagtcatgaaaccaggttctttacctctgcattttgttcaaatgactcattttgaatttattacttattga--aatgtaatta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16278479|gb|BI942925.1|BI942925
EST:     GGAAAATATTACCATT                         TTGTGCGGCTTATGGGGCGGGCGGCTTCACACATTACGCTGGAATGTGCTT
genomic: GGAAAATATTACCATTgtaagtacat ... ctgtctgcagTTGTGCGGCTTATGGGGCGGGCGGCTTCACACATTACGCTGGAATGTGCTT