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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATACTGTGCTGATGACTGCTCAGCAATTGCGGACTCTGGAACTTCTTTATTGGCTGGTCCAACGgtatgaataagtgcttgtaaatgtaggctgctatttagattttcatttccaattagaatttcatgatccgtaaggcatgctattaactaatgggaaaggg...

Basic information

species Glycine max
transcript GLYMA09G00810.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G00810.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 8
GATACTGTGCTGATGACTGCTCAGCAATTGCGGACTCTGGAACTTCTTTATTGGCTGGTCCAACGgtatgaataagtgcttgtaaatgtaggct--gctatttagattttcatttccaatt-agaatttcatgatccgtaaggcatgctattaactaatgggaaaggg
| |||||||| |  |  ||  |||||||||| || |||||||||||||| ||||| |||||||||||||| || ||| ||  |||  ||  | |    | |||  ||||| | |||      |  |  |  |  ||    |   ||  || ||  | ||         
GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatcagtactcttaagagtttggttaattgtttttattttaacttctgtcccatcaaatattcttctaggatttattgtactagttgatacactt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298187278|gb|HO034427.1|HO034427
EST:     ACTGCTCAGCAATTGCGGACTCTGGAACTTCTTTATTGGCTGGTCCAACG                         ACTGTGGTTACTATGATAAATCAAGCAATCGGAGCATCTGGAGTTGTAAGC
genomic: ACTGCTCAGCAATTGCGGACTCTGGAACTTCTTTATTGGCTGGTCCAACGgtatgaataa ... ctttttgtagACTGTGGTTACTATGATAAATCAAGCAATCGGAGCATCTGGAGTTGTAAGC
EST: gi|24136383|gb|BU926893.1|BU926893
EST:     TCTGGAACTTCTTTATTGGCTGGTCCAACG                         ACTGTGGTTACTATGATAAATCAAGCAATCGGAGCATCTGGAGTTGTAAGC
genomic: TCTGGAACTTCTTTATTGGCTGGTCCAACGgtatgaataa ... ctttttgtagACTGTGGTTACTATGATAAATCAAGCAATCGGAGCATCTGGAGTTGTAAGC