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CTTGGTCATGATGCTTATGTAAACCAACAAAGCACTGGTTTTGGAGGCGAGGGTGGCTTCAATCCTTTTGAGCAGATATTCCGTGATCATgtaagaacttggtagtttcttccctttattttattaatcatttctattaggagatacttctttctttgttggtctgcattgttgttgtaaaatcaaagta...
species | Glycine max |
transcript | GLYMA09G00580.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTGGAGGCGAGGGTGGCTTCAATCCTTTTGAGCAGATATTCCGTGATCAT GATTTTGTCAAGAGCTTCTTCCATGAGAATATTGGTGGAGAGGATGTCAAGEST: gi|7924054|gb|AW830062.1|AW830062
genomic: TTGGAGGCGAGGGTGGCTTCAATCCTTTTGAGCAGATATTCCGTGATCATgtaagaactt ... tggcaatcagGATTTTGTCAAGAGCTTCTTCCATGAGAATATTGGTGGAGAGGATGTCAAG
EST: TTGGAGGCGAGGGTGGCTTCAATCCTTTTGAGCAGATATTCCGTGATCAT GATTTTGTCAAGAGCTTCTTCCATGAGAATATTGGTGGAGAGGATGTCAAGEST: gi|193368168|gb|FK329984.1|FK329984
genomic: TTGGAGGCGAGGGTGGCTTCAATCCTTTTGAGCAGATATTCCGTGATCATgtaagaactt ... tggcaatcagGATTTTGTCAAGAGCTTCTTCCATGAGAATATTGGTGGAGAGGATGTCAAG
EST: TTGGAGGCGAGGGTGGCTTCAATCCTTTTGAGCAGATATTCCGTGATCAT GATTTTGTCAAGAGCTTCTTCCATGAGAATATTGGEST: gi|193702972|gb|FK639236.1|FK639236
genomic: TTGGAGGCGAGGGTGGCTTCAATCCTTTTGAGCAGATATTCCGTGATCATgtaagaactt ... tggcaatcagGATTTTGTCAAGAGCTTCTTCCATGAGAATATTGG
EST: TTGGAGGCGAGGGTGGCTTCAATCCTTTTGAGCAGATATTCCGTGATCAT GATTTTGTCAAGAGEST: gi|7284029|gb|AW596629.1|AW596629
genomic: TTGGAGGCGAGGGTGGCTTCAATCCTTTTGAGCAGATATTCCGTGATCATgtaagaactt ... tggcaatcagGATTTTGTCAAGAG
EST: TTGGAGGCGAGGGTGGCTTCAATCCTTTTGAGCAGATATTCCGTGATCAT GATTTTGTCAAGAGCTTCTTCCATGAGAATATTGGTGGAGAGGATGTCAAG
genomic: TTGGAGGCGAGGGTGGCTTCAATCCTTTTGAGCAGATATTCCGTGATCATgtaagaactt ... tggcaatcagGATTTTGTCAAGAGCTTCTTCCATGAGAATATTGGTGGAGAGGATGTCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGGTCATGATGCTTATGTAAACCAACAAAGCACTGGTTTTGGAGGCGAGGGTGGCTTCAATCCTTTTGAGCAGATATTCCGTGATCATgtaagaacttggtagtttcttccctttattttattaatcatttctattaggagatacttctttctttgttggtctgcattgttgttgtaaaatcaaagta
- - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcttccc