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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCATGAGAGATCCTGACACAGGAAATTCCCGTGGTTTTGGCTTCATTAGCTACGATTCATTTGAGGCATCTGATTCAGCCATTGAGgtatgcctcagtctagtgtttgaatcatttgtaggaatatagtgtgaggccaacctttcattcttttgttatacttattcagtacttgtggatcatgaat...

Basic information

species Glycine max
transcript GLYMA09G00310.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G00310.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G18510.1 (Arabidopsis thaliana), 5'ss of exon 7
ATCATGAGAGATCCTGACACAGGAAATTCCCGTGGTTTTGGCTTCATTAGCTACGATTCATTTGAGGCATCTGATTCAGCCATTGAGgta------tgcctcagtc-tagtgtttgaatc-----atttgt--------aggaatatagtgtgaggccaacctttcattcttttgttatacttattcagtacttgtggat--catgaat-------------------
|| ||||||||||| || || ||||| || || |||||||| ||||| ||||| || || ||||| ||||||||| | || |||||||||      ||| ||  || ||    |    ||     | |||         ||||    | | |    |  || ||| | |  |  | |   || || || |  | ||  ||  |    ||                   
ATAATGAGAGATCCCGATACTGGAAACTCACGAGGTTTTGGTTTCATCAGCTATGACTCCTTTGAAGCATCTGATGCTGCTATTGAGgtaattatctgcttctttcataactctcagttctatgaacttgcttacgaaaaggagcccaatatatttcacacatttaacttctccgattacctaatccaatggtagtatattcctctgatctttgtctgactattgcag

upper sequence: GLYMA09G00310.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0023g01470.t01 (Vitis vinifera), 5'ss of exon 7
ATCATGAGAGATCCTGACACAGGAAATTCCCGTGGTTTTGGCTTCATTAGCTACGATTCATTTGAGGCATCTGATTCAGCCATTGAGgtatgcctcagtc--tagtgtttgaatcatttgtaggaatatagtgtgaggccaacctttcattcttttgttatacttattcagtacttgtggatcatgaat----
|| |||||||||||||| ||||||||||| ||||||||||| ||| ||||||| || || ||||||||||||||| |||| ||||||||||   ||  |   |  | |||  ||    | ||||    | || | |         || |    |  |  | ||  |||||||| ||| |  | |||| |    
ATAATGAGAGATCCTGATACAGGAAATTCTCGTGGTTTTGGTTTCGTTAGCTATGACTCTTTTGAGGCATCTGATGCAGCTATTGAGgtatatatctcttgatgatattttcatatcatttagg----tggttttaactttctgcttaagctatgagaaacaca-attcagtatttg-gattaatgattggct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16346290|gb|BI971885.1|BI971885
EST:     TTGGCTTCATTAGCTACGATTCATTTGAGGCATCTGATTCAGCCATTGAG                         GCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCT
genomic: TTGGCTTCATTAGCTACGATTCATTTGAGGCATCTGATTCAGCCATTGAGgtatgcctca ... tattttgtagGCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCT