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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGATATGAAATCAAGGACATACTTGAAATGGAAATGAAGATTTTAGAAGCTCTTAATTATTACCTGGTTGTATACCATCCATACCGTTCACTATCTCCgtaagtgtttaataaagattgttttctcactgttcaggttttgcacacaagagtgttcaaattatgaaaaaacaattttatttgttcatacttttctgag...

Basic information

species Glycine max
transcript GLYMA08G46170.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G46170.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os09g32680.4 (Oryza sativa), 5'ss of exon 5
ATAGATATGAAATCAAGGACATACTTGAAATGGAAATGAAGATTTTAGAAGCTCTTAATTATTACCTGGTTGTATACCATCCATACCGTTCACTATCTCCgtaagtgtttaataaagattgttttctcactgttcaggtt--ttgcacacaagagtgttcaaattatgaaaaaacaattttatttgttcatacttttctgag--------------------------
|  | | |||||||||||| || |||||||||||||||||| |  | || || ||| | |||||  | ||||| ||||| ||||| ||| | || |  | |||||  ||   |    | | |  |   |     ||   |  |    |||  || |   | ||      | | | | ||| | |       |    |   |                           
ACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAgtaag-attctttttccactatcatgcgatgaaacaacattatctttcaccggaattaccgaagcccttatatatactttaaatgaacatcagagctgcaatggtattaacagatgctttgattttag

upper sequence: GLYMA08G46170.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0360g00050.t01 (Vitis vinifera), 5'ss of exon 6
ATAGATATGAAATCAAGGACATACTTGAAATGGAAATGAAGATTTTAGAAGCTCTTAATTATTACCTGGTTGTATACCATCCATACCGTTCACTATCTCCgtaagtg--tttaataaagattgttt-tctcactgttcaggttttgcacacaagagtgttcaaattatgaaaaaacaattttatttgttcatacttttctgag
|||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| || |||||  | ||||||| |||||| |||||| || | |||| ||||||   ||| ||    ||  | | | | |||||  | || | |   |        | ||   |        |   | | |        || |  | |   
ATAGGTATGAGATCAAGGACATACTTGAAATGGAAATGAAGATCTTAGAAGCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCAgtaagtacatttcatgtttatcatctattttactgtatatgtat-gtttatcttgcattccatccttaatgtgcattgtctcagcaacctctattgctttc--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|105633058|gb|DW246615.1|DW246615
EST:     GCGCTTAATTATTACCTGGTTGTATACCATCCATACCGTTCACTATCTCC                         GTTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACCTG
genomic: GCTCTTAATTATTACCTGGTTGTATACCATCCATACCGTTCACTATCTCCgtaagtgttt ... aattctccagGTTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTG
EST: gi|16343443|gb|BI969038.1|BI969038
EST:     ATACCATCCATACCGTTCACTATCTCC                         GTTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTG
genomic: ATACCATCCATACCGTTCACTATCTCCgtaagtgttt ... aattctccagGTTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTG
EST: gi|6566336|gb|AW234009.1|AW234009
EST:     GCTCTTAATTATTACCTGATTGTATACCATCCATACCGTTCACTATCTCC                         GTTGCTTCAGGATGCAAGTCTGAATGATCTAAACATGACTCAACTAACTTG
genomic: GCTCTTAATTATTACCTGGTTGTATACCATCCATACCGTTCACTATCTCCgtaagtgttt ... aattctccagGTTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTG
EST: gi|21256573|gb|BQ453461.1|BQ453461
EST:     GTTCACTATCTCC                         GTTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTG
genomic: GTTCACTATCTCCgtaagtgttt ... aattctccagGTTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTG