Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTTGCTGAATCTGTCAAGAAGGATTTTGGCACTATCGACATACTTGTGCACTCGCTTGCTAATGGACCAGAGgtattacaataatgaagtttcttgttgcctcatgtcttttagctttaactaacgttcaactttgttttag

Basic information

species Glycine max
transcript GLYMA08G45990.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G45990.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G125052_T01 (Zea mays), 5'ss of exon 5
GAAGTTGCTGAATCTGTCAAGAAGGATTTTGGCACTATCGACATACTTGTGCACTCGCTTGCTAATGGACCAGAGgtattacaata---------atgaagtttcttgt-tgcctcatgtcttttagctttaac---taacgttcaactttgttttag-----------------------------
||||||| |||||| || ||||| ||||||||||  || |||||||| |||||||| ||||||||||| |||||||||  | |             || |  |   |||    |   |||  |  ||||||  |   | ||  |  || |||| | |                              
GAAGTTGTTGAATCAGTGAAGAATGATTTTGGCAGCATTGACATACTAGTGCACTCTCTTGCTAATGGCCCAGAGgtacaatatcgcactcgcctgtgtatatgtgtgtgcagcgggtgtggtgcagcttttgcttgtgacactgtacattgtctaaccatcttaaaaaccacatgtcattttgaag

upper sequence: GLYMA08G45990.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G070422_T03 (Zea mays), 5'ss of exon 7
GAAGTTGCTGAATCTGTCAAGAAGGATTTTGGCACTATCGACATACTTGTGCACTCGCTTGCTAATGGACCAGAGgtattacaataatgaagtttcttgt---tgcctc-----atgtcttttagctttaactaacgttcaactttgttttag----------------------------------
||||||| |||||| || | ||| ||||||||||  || |||||||| ||||| || ||||||||||| |||||||||  |      ||  | |   | |   ||| |       |||  |  |||| |  |    |    ||||||| | |                                   
GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctccctgtcgctgtgtatatgtgcatacagcggtgtgctgcagctctttcctgtgac--actttgtctaaccatcttaaaaaccacctatattcattttgtgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16345261|gb|BI970856.1|BI970856
EST:     ATTTTGGCACTATCGACATACTTGTGCACTCGCTTGCTAATGGACCAGAG                         GTCAGCAAACTATTGTCCGAGACATCTCGGAAAGGATATCTTGCTGCCCTG
genomic: ATTTTGGCACTATCGACATACTTGTGCACTCGCTTGCTAATGGACCAGAGgtattacaat ... tttgttttagGTCAGCAAACTATTGTCCGAGACATCTCGGAAAGGATATCTTGCTGCCCTG
EST: gi|8283272|gb|BE020833.1|BE020833
EST:     ATTTTGGCACTATCGACATACTTGTGCACTCGCTTGCTAATGGACCAGAG                         GTCAGCAAACTATTGTCCGAGACATCTCGGAAAGGATATCTTGCTGCCCTG
genomic: ATTTTGGCACTATCGACATACTTGTGCACTCGCTTGCTAATGGACCAGAGgtattacaat ... tttgttttagGTCAGCAAACTATTGTCCGAGACATCTCGGAAAGGATATCTTGCTGCCCTG